Hi Catherine,
> it seems that there are no EPI templates available. Is this correct.
Yes. What I do, however, is to coregister the gm partition to the
functionals after correcting for EPI distortions, and use that to derive
the normalization parameters. Works for me.
> Also I was wondering if I can use your conversion command in Windows.
What finally worked for me after installing the MINC-tools was (all in
one line):
./rawtominc.exe -transverse -byte -unsigned -range 0 255 -real_range 0
1 -orange 0 255 -xstep 1 -ystep 1 -zstep 1 -xstart -91 -ystart -127
-zstart -73 -xdircos 1 0 0 -ydircos 0 1 0 -zdircos 0 0 1 -nomodality
-input CCHMC2_m.img CCHMC2_m.mnc 182 218 182
> Thanks in advance
You're welcome,
Marko
--
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Marko Wilke (Dr.med./M.D.)
[log in to unmask]
Universitäts-Kinderklinik University Children's Hospital
Abt. III (Neuropädiatrie) Dept. III (Pediatric neurology)
Hoppe-Seyler-Str. 1, D - 72076 Tübingen
Tel.: (+49) 07071 29-83416 Fax: (+49) 07071 29-5473
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