Hi,
Is the debabeler part of AFNI? It seemed to be a separate java application...
Matthew
On Mon, 21 Mar 2005 14:42:43 -0500, Rich Hammett <[log in to unmask]> wrote:
> All of AFNI's source code is available at
> http://afni.nimh.nih.gov
>
> Underlying nifti I/O libraries are already available there and at
> http://nifti.nimh.nih.gov , although they may differ.
>
> rich
>
> Matthew Brett wrote:
>
> >Hi,
> >
> >Thanks for making this tool available. Just to ask, are there plans
> >to release the source code?
> >
> >Best,
> >
> >Matthew
> >
> >On Mon, 21 Mar 2005 13:21:42 -0500, Rich Hammett <[log in to unmask]> wrote:
> >
> >
> >>As the person who's writing that software, I have to rush to
> >>say that the NIFTI I/O isn't complete yet, but we should have
> >>full conversion capabilities within a week or so.
> >>
> >>rich
> >>
> >>
> >>Dianne Patterson wrote:
> >>
> >>
> >>
> >>>Afni's tools, especially to3d, should also handle all three formats and
> >>>converting between them.
> >>>
> >>>-Dianne
> >>>
> >>>Dianne K. Patterson Ph.D.
> >>>Psychology, Room 217E
> >>>626-4571
> >>>Cognition and NeuroImaging Labs
> >>>University of Arizona
> >>>Tucson, AZ
> >>>
> >>>
> >>>Quoting "Stephen J. Fromm" <[log in to unmask]>:
> >>>
> >>>
> >>>
> >>>>On Sun, 20 Mar 2005 16:17:34 +0000, Johannes Gerber <[log in to unmask]
> >>>>DRESDEN.DE> wrote:
> >>>>
> >>>>
> >>>>
> >>>>>dear SPMers,
> >>>>>
> >>>>>trying to enjoy the best of all worlds I used Brain Extraction Tool
> >>>>>from
> >>>>>FSL to get brainy brains. then I got stuck when trying to
> >>>>>reintroduce the
> >>>>>extracted volumes into SPM (which I know best). does anybody have an
> >>>>>idea
> >>>>>how to convert NIFTI-images to ANALYZE? neither MRIcro nor SPM would
> >>>>>
> >>>>>
> >>>>digest
> >>>>
> >>>>
> >>>>
> >>>>>it without graet unease.
> >>>>>
> >>>>>
> >>>>You can direct FSL to output Analyze and not NIFTI.
> >>>>
> >>>>(Assuming you're using UNIX or LINUX and csh or tcsh...)
> >>>>
> >>>>Create a directory
> >>>> .fslconf
> >>>>in your home directory.
> >>>>
> >>>>Create a file named
> >>>> fsl.csh
> >>>>consisting of the single line
> >>>> setenv FSLOUTPUTTYPE ANALYZE
> >>>>(For safety's sake, make sure you return to the next line; sometimes not
> >>>>having a file end on a new line causes problems with these files).
> >>>>
> >>>>Then make sure that you log out and back in (or similar step to ensure
> >>>>this file is actually read). The variable is correctly read if you
> >>>>see it
> >>>>after typing
> >>>> printenv | grep -i fsl
> >>>>(at least this command works on my system...)
> >>>>
> >>>>
> >>>>
> >>>>
> >>>>
> >>>>
> >>>>>thanks a lot!
> >>>>>
> >>>>>Johannes
> >>>>>
> >>>>>
> >>--
> >>rich hammett SSCC/DIRP/NIMH
> >>National Institutes of Health
> >>Building 10, Room 1D80
> >>10 Center Drive, MSC1148
> >>Bethesda, MD 20892-1148
> >>ph 301-402-8416 fax 301-402-1370
> >>
> >>
> >>
>
> --
> rich hammett SSCC/DIRP/NIMH
> National Institutes of Health
> Building 10, Room 1D80
> 10 Center Drive, MSC1148
> Bethesda, MD 20892-1148
> ph 301-402-8416 fax 301-402-1370
>
>
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