Hi,
Thanks for making this tool available. Just to ask, are there plans
to release the source code?
Best,
Matthew
On Mon, 21 Mar 2005 13:21:42 -0500, Rich Hammett <[log in to unmask]> wrote:
> As the person who's writing that software, I have to rush to
> say that the NIFTI I/O isn't complete yet, but we should have
> full conversion capabilities within a week or so.
>
> rich
>
>
> Dianne Patterson wrote:
>
> > Afni's tools, especially to3d, should also handle all three formats and
> > converting between them.
> >
> > -Dianne
> >
> > Dianne K. Patterson Ph.D.
> > Psychology, Room 217E
> > 626-4571
> > Cognition and NeuroImaging Labs
> > University of Arizona
> > Tucson, AZ
> >
> >
> > Quoting "Stephen J. Fromm" <[log in to unmask]>:
> >
> >> On Sun, 20 Mar 2005 16:17:34 +0000, Johannes Gerber <[log in to unmask]
> >> DRESDEN.DE> wrote:
> >>
> >>> dear SPMers,
> >>>
> >>> trying to enjoy the best of all worlds I used Brain Extraction Tool
> >>> from
> >>> FSL to get brainy brains. then I got stuck when trying to
> >>> reintroduce the
> >>> extracted volumes into SPM (which I know best). does anybody have an
> >>> idea
> >>> how to convert NIFTI-images to ANALYZE? neither MRIcro nor SPM would
> >>
> >> digest
> >>
> >>> it without graet unease.
> >>
> >>
> >> You can direct FSL to output Analyze and not NIFTI.
> >>
> >> (Assuming you're using UNIX or LINUX and csh or tcsh...)
> >>
> >> Create a directory
> >> .fslconf
> >> in your home directory.
> >>
> >> Create a file named
> >> fsl.csh
> >> consisting of the single line
> >> setenv FSLOUTPUTTYPE ANALYZE
> >> (For safety's sake, make sure you return to the next line; sometimes not
> >> having a file end on a new line causes problems with these files).
> >>
> >> Then make sure that you log out and back in (or similar step to ensure
> >> this file is actually read). The variable is correctly read if you
> >> see it
> >> after typing
> >> printenv | grep -i fsl
> >> (at least this command works on my system...)
> >>
> >>
> >>
> >>
> >>> thanks a lot!
> >>>
> >>> Johannes
> >>
>
> --
> rich hammett SSCC/DIRP/NIMH
> National Institutes of Health
> Building 10, Room 1D80
> 10 Center Drive, MSC1148
> Bethesda, MD 20892-1148
> ph 301-402-8416 fax 301-402-1370
>
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