Afni's tools, especially to3d, should also handle all three formats and
converting between them.
-Dianne
Dianne K. Patterson Ph.D.
Psychology, Room 217E
626-4571
Cognition and NeuroImaging Labs
University of Arizona
Tucson, AZ
Quoting "Stephen J. Fromm" <[log in to unmask]>:
> On Sun, 20 Mar 2005 16:17:34 +0000, Johannes Gerber <[log in to unmask]
> DRESDEN.DE> wrote:
>
>> dear SPMers,
>>
>> trying to enjoy the best of all worlds I used Brain Extraction Tool from
>> FSL to get brainy brains. then I got stuck when trying to reintroduce the
>> extracted volumes into SPM (which I know best). does anybody have an idea
>> how to convert NIFTI-images to ANALYZE? neither MRIcro nor SPM would
> digest
>> it without graet unease.
>
> You can direct FSL to output Analyze and not NIFTI.
>
> (Assuming you're using UNIX or LINUX and csh or tcsh...)
>
> Create a directory
> .fslconf
> in your home directory.
>
> Create a file named
> fsl.csh
> consisting of the single line
> setenv FSLOUTPUTTYPE ANALYZE
> (For safety's sake, make sure you return to the next line; sometimes not
> having a file end on a new line causes problems with these files).
>
> Then make sure that you log out and back in (or similar step to ensure
> this file is actually read). The variable is correctly read if you see it
> after typing
> printenv | grep -i fsl
> (at least this command works on my system...)
>
>
>
>
>> thanks a lot!
>>
>> Johannes
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