> trying to enjoy the best of all worlds I used Brain Extraction Tool from
> FSL to get brainy brains. then I got stuck when trying to reintroduce the
> extracted volumes into SPM (which I know best). does anybody have an idea
> how to convert NIFTI-images to ANALYZE? neither MRIcro nor SPM would digest
> it without graet unease.
I haven't written anything that will do this yet. I only have code that will
convert Analyze into NIFTI format, as the next version of SPM will write all
images as NIFTI. If you are using Unix, then you could try the following:
gunzip FILE.nii.gz
mv FILE.nii FILE.img
ln -s FILE.img FILE.hdr
Then you could use the Display button to reorient/reposition the image via a
.mat file.
Best regards,
-John
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