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Subject:

Re: Any Papers on Presenting fMRI Results?

From:

Russ Poldrack <[log in to unmask]>

Reply-To:

Russ Poldrack <[log in to unmask]>

Date:

Thu, 3 Mar 2005 06:15:01 -0800

Content-Type:

multipart/alternative

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text/plain (126 lines) , text/enriched (219 lines)

Mikkel - this is generally a problem with classical hypothesis testing: 
since the point null hypothesis is never true, if you collect more data 
you will always reject it.  It's a good argument IMHO for Bayesian 
inference methods, where the inference becomes more precise as you 
collect more data.  However, this isn't really any issue for most fmri 
studies using random effects analyses, as we never have enough power to 
find insubstantial effects (if anything the worry is that we are 
generally under-powered).

cheers
russ

On Mar 3, 2005, at 2:15 AM, Mikkel Wallentin wrote:

> Just a small question from an amateur in relation to reporting 
> unthresholded
> maps:
>
> Isn't it true for fMRI, that the more data you acquire, the larger your
> blobs become, regardless of anything else? If you just have enough 
> data, you
> can fit any model and get results.
> Therefore, isn't it a problem with unthresholded maps that the more 
> power
> you
> have, the less meaningful the unthresholded map becomes?
>
>
> Cheers,
> Mikkel Wallentin
>
> ----- Original Message -----
> From: "Matthew Brett" <[log in to unmask]>
> To: <[log in to unmask]>
> Sent: Wednesday, March 02, 2005 8:05 PM
> Subject: Re: [SPM] Any Papers on Presenting fMRI Results?
>
>
>> Dear Daniel, Mauro,
>>
>> Sorry to reply to you both, but I was finding some overlap in what I
>> wanted to say.
>>
>> Thanks again for replies, which were thought-provoking.  Here were the
>> provoked thoughts!
>>
>> Daniel wrote:
>>> I guess I don't think it's fair to expect articles to explicitly
>>> describe what inferences can't be made from the data.  I'm happy with
>>> just, "area A was significantly more active during A than B."
>>
>> which I'm going to claim is kind of the same thing as Mauro wrote:
>>
>>> >A passes significance at p=0.05, B doesn't p=0.04.  It could very
>>> >easily be that B has even has a higher effect size than A.  It seems
>>> >to me very misleading to report 'A is significant' without 'B is
>>> >very close to A'.
>>>
>>> Sure, but in such a case, I wouldn't accept any inference about "A
>>> vs. B" without a specific test. Which brings us back to square one:
>>> How can we assess differences across areas rather (or in addition to)
>>> differences across conditions/design?
>>
>> The key point here is that I think people _are_ universally drawing an
>> _implicit_ conclusion about A vs B when commenting on a thresholded
>> map.
>>
>> To take the behavioral example.  Let us say you are doing a study on
>> patients with dorsolateral prefrontal cortex damage and test them on
>> (task A) spatial working memory and (task B) a stroop task.  A gives
>> p=0.05, B gives p=0.06.  You don't report the result for B atall and
>> only report A, and say, 'frontal lobe patients are impaired on spatial
>> working memory'.  It would be true to say this, but it would be very
>> misleading, because it implies that patients with frontal lobe lesions
>> are _particulary_ impaired on spatial working memory, for which you
>> have no good evidence.  The reason that 'frontal lobe patients are
>> impaired on spatial working memory' implies the unsupported 'frontal
>> lobe patients are _particularly_ impaired on spatial working memory'
>> is that, if frontal lobe patients are impaired on all tests, or even
>> all tests of memory, stating that they are impaired on spatial working
>> memory is entirely uninteresting.
>>
>> Obviously I'm drawing a parellel with the thresholded SPM map.  Again
>> we have done many measurements.  Again we are simply not reporting the
>> results of the large majority of the measurements.  Let's say 'Area X
>> is activated by task A'.  On its own, this is misleading, because this
>> statement would be entirely uninteresting if it is also true that the
>> whole of the rest of the brain is activated to a similar extent.  So,
>> I believe that 'Area X is activated by task A' actually strongly
>> implies 'Area X _in particular_ is activated by task A' for which it
>> is very rare to present any good evidence.
>>
>>> One thing we haven't talked about is the kinds of invalid inferences
>>> encouraged by unthresholded maps.  If you have maps from 
>>> under-powered
>>> studies of two tasks (B-A and C-A), side-by-side comparison is liable
>>> to suggest some obvious but false differences and/or similarities.
>>
>> Again, this is an important point.  Should you remove a lot of your
>> data by using a thresholded map, and prevent people from drawing
>> possibly invalid conclusions about the data that is not significant?
>> My own view would be you should not, and that I would be happy for
>> someone to make a reasoned argument about - say - an area that was not
>> significant, but that was close to signficance, looked as though it
>> was specifically activated (red surrounded by blue) and was bilateral.
>> That also happens in the behavioral literature - you can discuss
>> trends in data.
>>
>> See you,
>>
>> Matthew
>>
>>
---
Russell A. Poldrack, Ph.d.
Assistant Professor
UCLA Department of Psychology
Franz  Hall, Box 951563
Los Angeles, CA 90095-1563

phone: 310-794-1224
fax: 310-206-5895
email: [log in to unmask]
web: www.poldracklab.org

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