> I am trying to register the rat brain EPI images to a rat
> brain digital atlas and I am not satisfied with the output , I am acquiring
> only 7 slices in the EPI and anatomical , could the smaller volume be a
> problem or the module is still under development for the rat brain . Please
> let me know if anyone has done it before. Johan I am still waiting on ur
> reply .
You would need to change various defaults. For example, spatial normalisation
smooths the source image by 8mm by default. If you smooth a rat brain image,
then this wouldn't leave you much information to work with. A search for the
keywords
rat OR monkey OR fly
in the SPM archives should give you a few clues (note that many of the
responses contain links that no longer work since the archives were
"annualised"). Try this one to begin with:
http://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind04&L=spm&P=R236249&I=-1
Best regards,
-John
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