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LCG-ROLLOUT  2005

LCG-ROLLOUT 2005

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Subject:

Re: problem with sft

From:

Gerhard Walzel <[log in to unmask]>

Reply-To:

LHC Computer Grid - Rollout <[log in to unmask]>

Date:

Wed, 12 Oct 2005 15:48:59 +0200

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (257 lines)

Hi
The job was started 0015
Ps was done 1345
    1 ?        S      0:05 init
    2 ?        SW     0:00 [migration/0]
    3 ?        SW     0:00 [migration/1]
    4 ?        SW     0:00 [migration/2]
    5 ?        SW     0:00 [migration/3]
    6 ?        SW     0:00 [keventd]
    7 ?        SWN    0:00 [ksoftirqd/0]
    8 ?        SWN    0:00 [ksoftirqd/1]
    9 ?        SWN    0:00 [ksoftirqd/2]
   10 ?        SWN    0:00 [ksoftirqd/3]
   13 ?        SW     0:00 [bdflush]
   11 ?        SW     0:00 [kswapd]
   12 ?        SW     0:03 [kscand]
   14 ?        SW     0:01 [kupdated]
   15 ?        SW     0:00 [mdrecoveryd]
   23 ?        SW     0:00 [scsi_eh_0]
   26 ?        SW     0:02 [kjournald]
   81 ?        SW     0:00 [khubd]
 1437 ?        SW     0:00 [kjournald]
 1838 ?        S      0:00 syslogd -m 0
 1842 ?        S      0:00 klogd -x
 1852 ?        S      0:04 irqbalance
 1869 ?        S      0:00 portmap
 1888 ?        S      0:00 rpc.statd
 2022 ?        S      0:02 /usr/sbin/automount --timeout=60 /tmp_mnt file
/etc/auto.direct
 2619 ?        SW     0:00 [afs_rxlistener]
 2622 ?        SW     0:00 [afs_callback]
 2623 ?        SW     0:00 [afs_rxevent]
 2625 ?        SW     0:00 [afsd]
 2627 ?        SW     0:00 [afs_checkserver]
 2630 ?        SW     0:00 [afs_background]
 2631 ?        SW     0:00 [afs_background]
 2633 ?        SW     0:00 [afs_background]
 2635 ?        SW     0:00 [afs_cachetrim]
 2651 ?        S      0:00 /usr/sbin/sshd
 2665 ?        S      0:00 xinetd -stayalive -pidfile /var/run/xinetd.pid
 2680 ?        SL     0:01 ntpd -U ntp -p /var/run/ntpd.pid -g
 2689 ?        S      0:00 gpm -t imps2 -m /dev/input/mice
 2698 ?        S      0:00 crond
 2730 ?        S      0:00 xfs -droppriv -daemon
 2747 ?        S      0:00 /usr/sbin/atd
 2766 tty1     S      0:00 /sbin/mingetty tty1
 2767 tty2     S      0:00 /sbin/mingetty tty2
 2768 tty3     S      0:00 /sbin/mingetty tty3
 2769 tty4     S      0:00 /sbin/mingetty tty4
 2770 tty5     S      0:00 /sbin/mingetty tty5
 2771 tty6     S      0:00 /sbin/mingetty tty6
 2772 ?        S      0:00 /usr/bin/gdm-binary -nodaemon
 2930 ?        S      0:00 /usr/bin/gdm-binary -nodaemon
 2931 ?        S      1:30 /usr/X11R6/bin/X :0 -auth /var/gdm/:0.Xauth vt7
 2940 ?        S      0:49 /usr/bin/gdmgreeter
10457 ?        S      2:00 /usr/sbin/pbs_mom -p
 7649 ?        S      0:00 -sh
 7853 ?        S      0:00 /bin/sh
/var/spool/pbs/mom_priv/jobs/5678.hephyg.SC
 7857 ?        S      0:00 /usr/bin/perl -w /tmp/bootstrap.cw7854
/home/dteam004/ hephygr.oeaw.ac.at
/home/dteam004/.globus/.gass_cache/local/md5/f1/7c1507eab8a728b3897b8faee0b5
96/md5/b9/28a7d9f2d8ba72d3e92f6b3dc7ab79/data
X509GPG:globus-cache-export.BV8458.gpg /dev/null
/home/dteam004/.globus/.gass_cache/local/md5/f1/7c1507eab8a728b3897b8faee0b5
96/md5/3b/2e51c2f82d28fd1e1aea45785db34d/data stdoutftp
/home/dteam004/.globus/.gass_cache/local/md5/f1/7c1507eab8a728b3897b8faee0b5
96/md5/52/de4c7badf3ec6e9aa1ee0f7ee0512d/data stderrftp
/home/dteam004/.lcgjm/globus-cache-export.BV8458
https://hephygr.oeaw.ac.at:20002/8153/1129076045/ /home/dteam004/ NONE
https://gdrb02.cern.ch:20024/var/edgwl/jobcontrol/submit/uS/JobWrapper.https
_3a_2f_2fgdrb02.cern.ch_3a9000_2fuS1p6-8eyBVm--QNRR9OqA.sh
UI=000003:NS=0000000003:WM=000004:BH=0000000000:JSS=000003:LM=000000:LRMS=00
0000:APP=000000
 7863 ?        S      0:00 /usr/bin/perl -w /tmp/bootstrap.cw7854
/home/dteam004/ hephygr.oeaw.ac.at
/home/dteam004/.globus/.gass_cache/local/md5/f1/7c1507eab8a728b3897b8faee0b5
96/md5/b9/28a7d9f2d8ba72d3e92f6b3dc7ab79/data
X509GPG:globus-cache-export.BV8458.gpg /dev/null
/home/dteam004/.globus/.gass_cache/local/md5/f1/7c1507eab8a728b3897b8faee0b5
96/md5/3b/2e51c2f82d28fd1e1aea45785db34d/data stdoutftp
/home/dteam004/.globus/.gass_cache/local/md5/f1/7c1507eab8a728b3897b8faee0b5
96/md5/52/de4c7badf3ec6e9aa1ee0f7ee0512d/data stderrftp
/home/dteam004/.lcgjm/globus-cache-export.BV8458
https://hephygr.oeaw.ac.at:20002/8153/1129076045/ /home/dteam004/ NONE
https://gdrb02.cern.ch:20024/var/edgwl/jobcontrol/submit/uS/JobWrapper.https
_3a_2f_2fgdrb02.cern.ch_3a9000_2fuS1p6-8eyBVm--QNRR9OqA.sh
UI=000003:NS=0000000003:WM=000004:BH=0000000000:JSS=000003:LM=000000:LRMS=00
0000:APP=000000
 8116 ?        S      0:00 /usr/bin/perl -w /tmp/bootstrap.cw7854
/home/dteam004/ hephygr.oeaw.ac.at
/home/dteam004/.globus/.gass_cache/local/md5/f1/7c1507eab8a728b3897b8faee0b5
96/md5/b9/28a7d9f2d8ba72d3e92f6b3dc7ab79/data
X509GPG:globus-cache-export.BV8458.gpg /dev/null
/home/dteam004/.globus/.gass_cache/local/md5/f1/7c1507eab8a728b3897b8faee0b5
96/md5/3b/2e51c2f82d28fd1e1aea45785db34d/data stdoutftp
/home/dteam004/.globus/.gass_cache/local/md5/f1/7c1507eab8a728b3897b8faee0b5
96/md5/52/de4c7badf3ec6e9aa1ee0f7ee0512d/data stderrftp
/home/dteam004/.lcgjm/globus-cache-export.BV8458
https://hephygr.oeaw.ac.at:20002/8153/1129076045/ /home/dteam004/ NONE
https://gdrb02.cern.ch:20024/var/edgwl/jobcontrol/submit/uS/JobWrapper.https
_3a_2f_2fgdrb02.cern.ch_3a9000_2fuS1p6-8eyBVm--QNRR9OqA.sh
UI=000003:NS=0000000003:WM=000004:BH=0000000000:JSS=000003:LM=000000:LRMS=00
0000:APP=000000
 8327 ?        S      0:00 bash
/home/dteam004/globus-tmp.zirbe.7857.0/globus-tmp.zirbe.7857.0/local/md5/f1/
7c1507eab8a728b3897b8faee0b596/md5/63/d42ca6acc8a7188b5f2b9e6926b5f8/data
UI=000003:NS=0000000003:WM=000004:BH=0000000000:JSS=000003:LM=000000:LRMS=00
0000:APP=000000
 8395 ?        S      0:00 bash
/home/dteam004/globus-tmp.zirbe.7857.0/globus-tmp.zirbe.7857.0/local/md5/f1/
7c1507eab8a728b3897b8faee0b596/md5/63/d42ca6acc8a7188b5f2b9e6926b5f8/data
UI=000003:NS=0000000003:WM=000004:BH=0000000000:JSS=000003:LM=000000:LRMS=00
0000:APP=000000
 8396 ?        S      0:00 /bin/bash ./testJob.sh
 8397 ?        SN     0:01 python2 /opt/lcg/bin/lcg-mon-wn -j
https://gdrb02.cern.ch:9000/uS1p6-8eyBVm--QNRR9OqA -p
/tmp/globus-tmp.zirbe.7857.0 -l 5678.hephygr.oeaw.ac.at -v dteam -r
gdrb02.cern.ch 7649 8396
 8398 ?        S      0:00 perl -e ?    while (1) {?      $time_left =
`grid-proxy-info -timeleft 2> /dev/null` || 0;?      last if ($time_left <=
0);?      sleep($time_left);?    }?
kill(defined($ENV{"EDG_WL_NOSETPGRP"}) ? 9 : -9, 8396);?    exit(1);?
 8414 ?        S      0:00 perl ./run-test sft-lcg-rm
 8456 ?        S      0:00 /bin/bash tests/sft-lcg-rm
 9890 ?        S      0:00 perl ./run-test sft-lcg-rm-cr
 9892 ?        S      0:00 /bin/bash tests/sft-lcg-rm-cr
 9903 ?        S      0:00 lcg-cr -v --vo dteam -d hephyse.oeaw.ac.at -l
lfn:sft-lcg-rm-cr-zirbe.0510120015
file:///home/dteam004/globus-tmp.zirbe.7857.0/WMS_zirbe_08327_https_3a_2f_2f
gdrb02.cern.ch_3a9000_2fuS1p6-8eyBVm--QNRR9OqA/sft-lcg-rm-cr.txt
20381 ?        S      0:00 sshd: root@pts/0
20383 pts/0    S      0:00 -bash
21731 ?        S      0:00 sshd: root@pts/1
21733 pts/1    S      0:00 -bash
21892 pts/1    R      0:00 ps -ax
[root@zirbe root]# 

........
Regards 
    Gerhard


On 10/12/05 3:22 PM, "Piotr Nyczyk" <[log in to unmask]> wrote:

> Hi Guys,
> 
> I was trying to figure out why the test job could hang, but I must
> admit that I was unable to reproduce the problem. Normally all tests
> are killed automatically after 15 minutes by the SIGALRM signal
> handler (the signal handler sends KILL signal to test process), and
> when I try to simulate hanging tests everything works fine for me.
> 
> Could you please check the list of running processes on the WN when
> it happens next time? And if it's possible if you could also note
> down the time when the job actually started to execute and when you
> checked the process table...
> This is the most obvious way we can investigate what is happening.
> 
> Piotr
> 
> On Oct 12, 2005, at 1:00 PM, Gerhard Walzel wrote:
> 
>> Judit
>> I have exact the same problem on site Hephy-Vienna
>> Just starting at 0015 !
>> Last days I have simply removed the job to enable
>> Sft tests again...
>> Gerhard
>> 
>> 
>> On 10/12/05 11:59 AM, "NOVAK Judit" <[log in to unmask]> wrote:
>> 
>> 
>>> Hi Christos,
>>> 
>>> 
>>> In the site history I can see two Job Submission failures,
>>> both from last week. The last one run to a timeout (while gstat
>>> reports many free CPUs -- is it all OK with the batch system?).
>>> 
>>> 
>>> Judit
>>> 
>>> 
>>> 
>>> 
>>> On k, okt 11, Filippidis christos wrote:
>>> 
>>>> hi to all,
>>>> 
>>>> i have the following problem:
>>>> 
>>>> our site here at demokritos is passing the sft but the last week
>>>> every day
>>>>  when  dteam002 "/c=ch/o=cern/ou=grid/cn=judit novak 0973" send
>>>> an sft at
>>>> 18:00 the job never ends or it stop the next day and the result
>>>> is CT or js
>>>> 
>>>> the same time when i send an sft from this site:
>>>> https://monitoring.egee.man.poznan.pl/
>>>> everythink is ok,
>>>> 
>>>> 
>>>> it is also  strange  that when judit novak send an sft at an
>>>> other period
>>>> of the day ,for example the morning, the sft is succesfull.
>>>> 
>>>> do you have any ideas?
>>>> 
>>>> thanks xristos
>>>> 
>>>> 
>>>> Christos Filippidis
>>>> NCSR DEMOKRITOS
>>>> Institute of Nuclear Physics
>>>> office block 6(ktirion 6)
>>>> Gr-15310 Agia Paraskevi
>>>> GREECE
>>>> Tel:2106503425
>>>> 
>>>> http://consult.cern.ch/xwho/people/117002
>>>> http://www.inp.demokritos.gr/~filippidisx/
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> ----------------------------------------------
>>>> 
>>>> "Institute of Nuclear Physics NCSR Demokritos"
>>>>  http://www.inp.demokritos.gr/
>>>> 
>>>> 
>>>> 
>>>> Christos Filippidis
>>>> NCSR DEMOKRITOS
>>>> Institute of Nuclear Physics
>>>> office block 6(ktirion 6)
>>>> Gr-15310 Agia Paraskevi
>>>> GREECE
>>>> Tel:2106503425
>>>> 
>>>> http://consult.cern.ch/xwho/people/117002
>>>> http://www.inp.demokritos.gr/~filippidisx/
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> ----------------------------------------------
>>>> 
>>>> "Institute of Nuclear Physics NCSR Demokritos"
>>>>  http://www.inp.demokritos.gr/
>> 

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