Hi Anja,
I had similar problem. It was related with some packages installed togethr 
with tomcat4. Check if you have installed tomcat4-4.1.18-full.1jpp and
edg-java-security-tomcat4-1.5.11-1_sl3. If yes, just unistall them. Also, be 
sure to dist-upgrade all your nodes before doing configure_node, since 
several new important rpms are now available.

Good luck,
Antun

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Scientific Computing Laboratory
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Serbia and Montenegro
-----


---------- Original Message -----------
From: Anja Vest <[log in to unmask]>
To: [log in to unmask]
Sent: Tue, 9 Aug 2005 10:00:05 +0200
Subject: [LCG-ROLLOUT] R-GMA: tomcat5 and JAVA_LIBDIR

> Dear all,
> I recently upgraded the EKP Karlsruhe site to LCG 2.6.0.
> The only problem we still have is related to the R-GMA.
> 
> The tests on the corresponding nodes sometimes succeed, but more 
> often they fail.
> 
>  > $RGMA_HOME/bin/rgma-client-check
>  > $RGMA_HOME/bin/rgma-server-check
> 
> During the configuration of the monitoring box I get some messages 
> concerning tomcat5 and JAVA_LIBDIR (like it was described in the 
> manual upgrade, I first deinstalled tomcat4, then I installed tomcat5...
> Can someone tell me what that means and how I can resolve it?
> 
> Best regards,
> Anja
> 
> [root@ekp-lcg-mon root]# /opt/lcg/yaim/scripts/configure_node 
> /opt/lcg/yaim/examples/site-info_260.def MON
> Configuring config_upgrade ...
> Configuring config_ldconf ...
> Configuring config_sysconfig_edg ...
> Configuring config_sysconfig_globus ...
> Configuring config_edgusers ...
> Configuring config_java ...
> Configuring config_crl ...
> Configuring config_gip ...
> /opt/lcg/yaim/scripts/configure_node: line 456: 
> /opt/lcg/sbin/lcg-info-generic-config: No such file or directory
> 
> Setting up an R-GMA Gin...
> 
>  - Configuring a gip information provider
>  - Not configuring an fmon information provider
>  - Not configuring a glite-ce information provider
> 
> Wrote configuration to: /opt/glite/etc/rgma-gin/gin.conf
> 
> All done
> 
> Stopping rgma-gin:                                         [  OK  ]
> Starting rgma-gin:                                         [  OK  ]
> /opt/lcg/yaim/scripts/configure_node: line 529: 
> /opt/lcg/libexec/lcg-info-dynamic-ce: No such file or directory
> chmod: failed to get attributes of 
> `/opt/lcg/libexec/lcg-info-dynamic-ce': No such file or directory
> Configuring config_globus ...
> Configuring config_rgma_client ...
> 
> Welcome to the R-GMA setup utility
> ----------------------------------
> 
> Configuration written to:
> 
>  /opt/glite/etc/rgma/rgma.conf
> 
> Configuring config_rgma_server ...
> Info: using default install root: /opt/glite
> Info: using default configuration file: 
> /opt/glite/etc/glite-security-trustmanager/config.properties
> Info: using default configuration directory: 
> /opt/glite/etc/glite-security-trustmanager
> Warning: /opt/glite/etc/glite-security-trustmanager/server.xml 
> already exists! Saving old one as /opt/glite/etc/glite-security-
trustmanager/server.xml.old.
> Info: you can clean up using the following commands
>      mv -f /etc/tomcat5/server.xml.old-glite /etc/tomcat5/server.xml
>      rm -f /var/lib/tomcat5/server/lib/bcprov-jdk14-122.jar
>      rm -f /var/lib/tomcat5/server/lib/log4j-1.2.8.jar
>      rm -f /var/lib/tomcat5/server/lib/glite-security-
> trustmanager.jar     rm -f /var/lib/tomcat5/server/lib/glite-
> security-util-java.jar     rm -f /etc/tomcat5/log4j-trustmanager.properties
>      rm -f /opt/glite/etc/glite-security-trustmanager/server.xml
> 
> waiting for processes to exit                              [  OK  ]
> waiting for processes to exit
> Starting tomcat5: /usr/bin/rebuild-jar-repository: error: 
> JAVA_LIBDIR must be set /usr/bin/rebuild-jar-repository: error: 
> JAVA_LIBDIR must be set /usr/bin/rebuild-jar-repository: error: 
> JAVA_LIBDIR must be set /usr/bin/rebuild-jar-repository: error: 
> JAVA_LIBDIR must be set /usr/bin/rebuild-jar-repository: error: 
> JAVA_LIBDIR must be set /usr/bin/rebuild-jar-repository: error: 
> JAVA_LIBDIR must be set /usr/bin/rebuild-jar-repository: error: 
> JAVA_LIBDIR must be set                                              
>             [  OK  ] Shutting down rgma-publish-site:                
>            [  OK  ] Starting rgma-publish-site:                      
>           [  OK  ] Stopping rgma-servicetool: stty: standard input: 
> Inappropriate ioctl for device                                       
>                    [  OK  ] Starting rgma-servicetool: stty: 
> standard input: Inappropriate ioctl for device                       
>                                    [  OK  ] Configuring 
> config_apel_rgma ... Configuring config_fmon_client ... Stopping edg-
> fmon-agent:                                   [  OK  ] Starting edg-
> fmon-agent:                                   [  OK  ] Configuration 
> Complete
------- End of Original Message -------