Hi
did you load these into FSLView then? The web pages are generated
using the axial views (only). If you want full interactive control,
just load the thresholded images into FSLView together with an
example func.
You might also want to register the IC maps of interest into the MNI
standard space.
cheers
christian
On 21 Oct 2005, at 19:55, Shruthi Chakrapani wrote:
> Hello
>
> I did as you asked me to do.Ran MELODIC with 'output full stats
> folder'.I
> could see all the thresholded images.But is there a way to view the
> component maps(what we see on the web browser after doing Melodic)
> on any
> other view?
>
> Looking at the IC maps(on the web browser) we are not able to figure
> out(approximately) which part of the brain region is activated.So we
> wanted to see each component maps on all views and try to find out
> approximately where on the brain the activations appear.Is there a
> way to
> do this.
>
> Thank you
> Shruthi
>
> Hi
>
>>
>> You can view the (unthresholded) ICA maps easily by loading
>> melodic_IC intoo FSLView. Also, if you run melodic with the ---Ostats
>> option (from the command line) or the 'output full stats folder' (in
>> the GUI) then the bllah.ica folder will contain a stats folder with
>> all the thresholded images in it. Again FSLView is quite nice for
>> looking at these.
>> cheers
>> christian
>>
>>
>> On 21 Oct 2005, at 18:43, Shruthi Chakrapani wrote:
>>
>>
>>> Hello All
>>>
>>> I wanted to know if there is a way to view the MELODIC output in
>>> any other
>>> views or in all the three views(Axial,sagittal,Coronal).
>>>
>>> Thank you
>>> Shruthi
>>>
>>>
>>
>> --
>> Christian F. Beckmann
>> Oxford University Centre for Functional
>> Magnetic Resonance Imaging of the Brain,
>> John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
>> Email: [log in to unmask] - http://www.fmrib.ox.ac.uk/
>> ~beckmann/
>> Phone: +44(0)1865 222551 Fax: +44(0)1865 222717
>>
>>
>>
>
--
Christian F. Beckmann
Oxford University Centre for Functional
Magnetic Resonance Imaging of the Brain,
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
Email: [log in to unmask] - http://www.fmrib.ox.ac.uk/~beckmann/
Phone: +44(0)1865 222551 Fax: +44(0)1865 222717
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