> Hi Juergen,
>
> Glad you got the orientation/format issues sorted. With
> respect to the BET options, I found the default settings gave
> slight overestimates of the brain, and better results with
> the bet option "-c 122 119 130", because there's lots of neck
> in this data.
>
> To add this option into the SIENA analysis for example, take
> a local copy of $FSLDIR/bin/siena and edit it to add -c 122
> 119 130 to the two bet calls, just before the ">>" redirection.
>
> Cheers, Steve.
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