Hi - it depends on what other processes are running and how much swap you
have. Try increasing the swap and see if that fixes it.
Cheers, Steve.
On Wed, 17 Aug 2005, Jürgen Hänggi wrote:
> Hi Steve
>
> thanks for your advise. Do you think
> 2 GB RAM is not enough?
>
> Best regards
> Juergen
>
> > -----Ursprüngliche Nachricht-----
> > Von: FSL - FMRIB's Software Library
> > [mailto:[log in to unmask]] Im Auftrag von Stephen Smith
> > Gesendet: Dienstag, 16. August 2005 20:39
> > An: [log in to unmask]
> > Betreff: Re: [FSL] Error message running SIENA
> >
> > Hi Juergen,
> >
> > On Tue, 16 Aug 2005, Jürgen Hänggi wrote:
> >
> > > I have run SIENA and the following error message had occured. What
> > > does it mean?
> > >
> > > Warning: Both reference and input image have an sform matrix set
> > > The output image will use the transformed sform from the
> > > reference image.
> >
> > This is just a file format related warning which is not a
> > problem - ignore this.
> >
> > > Error:
> > nifti_image_read<T1_2002_halfwayto_scT1_2002_brain_seg>: cant
> > > open header file
> > > Error: nifti_image_open<T1_2002_halfwayto_scT1_2002_brain_seg>: bad
> > > header info
> > > Error: failed to open file T1_2002_halfwayto_scT1_2002_brain_seg
> > > Error:: FslCloneHeader: Null pointer passed for FSLIO
> > > dc: stack empty
> >
> > This probably means that the FAST segmentation crashed -
> > probably because you don't have enough RAM/SWAP on your
> > computer - try increasing the swap and running again.
> >
> > Cheers, Steve.
> >
> > >
> > > Thanks a lot for helping
> > > Best regards
> > > Juergen
> > >
> > > ----------------------------------------------
> > > Juergen Haenggi, Ph.D. student
> > > Division of Psychiatry Research
> > > Psychiatric University Hospital
> > > University of Zurich, Switzerland
> > > P.O. Box 1931
> > > Lenggstrasse 31, 8032 Zurich
> > > 0041 44 384 26 10 (office phone)
> > > 0041 76 445 86 84 (mobile phone)
> > > 0041 44 384 26 86 (fax)
> > > H 115 (office room number)
> > > [log in to unmask] (division email)
> > > http://www.dpr.unizh.ch/ (division website)
> > > http://www.juergenhaenggi.ch (private website)
> > > ----------------------------------------------
> > >
> > >
> >
> > --
> > Stephen M. Smith DPhil
> > Associate Director, FMRIB and Analysis Research Coordinator
> >
> > Oxford University Centre for Functional MRI of the Brain
> > John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
> > +44 (0) 1865 222726 (fax 222717)
> >
> > [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> >
> >
>
--
Stephen M. Smith DPhil
Associate Director, FMRIB and Analysis Research Coordinator
Oxford University Centre for Functional MRI of the Brain
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
|