Hi, FSLers. I have a very simple Feat job, but it keeps crashing and
I'm not sure why. There are 300 epi images (concatenated into a nii.gz
file that is 114mb) and one covariate that is entered as a custom one
entry per volume, not convolved. What's clear from the report.log
(pasted below) is that it can't find the sigmasquareds file, and this
file seems not to be created. I've tried rerunning with and without
prestats steps and registration, and always the same error. Any ideas?
Thanks in advance..
Started FEAT at Tue Dec 13 13:06:59 2005 on cohen
FEAT output is d:/mikeData/testing/mike_dec13/normal/left2.feat
/bin/cp /tmp/feat_LdSJ2c.fsf design.fsf
/usr/local/fsl/bin/feat_model design
Total original volumes = 300
/usr/local/fsl/bin/avwroi
d:/mikeData/restingNuac/testing/mike_dec13/normal/rest example_func
150 1
/usr/local/fsl/bin/ip
d:/mikeData/restingNuac/testing/mike_dec13/normal/rest
filtered_func_data 10 -s 2.54777070064 -m mask -I 10000 -t 20.0 -1 |
grep THRESHOLD | awk '{ print }' -
1000
rm -rf prefiltered_func_data*
/usr/local/fsl/bin/film_gls -rn stats -sa -ms 5 -sp
/usr/local/fsl/bin/susan_smooth filtered_func_data design.mat
1000.000000
Log directory is: stats
Calculating residuals...
Completed
Estimating residual autocorrelation...
Calculating raw AutoCorrs... Completed
mode = 2488.68
sig = 8799
Spatially smoothing auto corr estimates
/usr/local/fsl/bin/susan_smooth stats/preSmoothVol 1
stats/postSmoothVol 5 3D 0 1 stats/epivolume 2933 stats/usanSize
................
rm -rf stats/postSmoothVol* stats/preSmoothVol* stats/usanSize*
Completed
Tukey M = 17
Tukey estimates... Completed
Completed
Prewhitening and Computing PEs...
Percentage done:
1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,
29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,
54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,
79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,Completed
Saving results...
/usr/local/fsl/bin/contrast_mgr stats design.con
** ERROR: nifti_image_read(stats/sigmasquareds): can't open header file
** ERROR: nifti_image_open(stats/sigmasquareds): bad header info
Error: failed to open file stats/sigmasquareds
Error:: FslGetDim: Null pointer passed for FSLIO
Rendering using zmin=2.3 zmax=8
mkdir tsplot
/usr/local/fsl/bin/tsplot . -f filtered_func_data -o tsplot
** ERROR: nifti_image_read(./stats/pe1): can't open header file
** ERROR: nifti_image_open(./stats/pe1): bad header info
Error: failed to open file ./stats/pe1
ERROR: Could not open image ./stats/pe1
Image Exception : #22 :: Failed to read volume ./stats/pe1
/bin/mkdir reg
/usr/local/fsl/bin/flirt -ref highres -in example_func -out
example_func2highres -omat example_func2highres.mat -cost corratio
-dof 6 -schedule /usr/local/fsl/etc/flirtsch/sch3Dtrans_3dof -searchrx
-90 90 -searchry -90 90 -searchrz -90 90 -interp trilinear
/usr/local/fsl/bin/convert_xfm -matonly -inverse -omat
highres2example_func.mat example_func2highres.mat
/usr/local/fsl/bin/slicer example_func2highres highres -s 1 -x 0.35
sla -x 0.45 slb -x 0.55 slc -x 0.65 sld -y 0.35 sle -y 0.45 slf -y
0.55 slg -y 0.65 slh -z 0.35 sli -z 0.45 slj -z 0.55 slk -z 0.65 sll ;
/usr/local/fsl/bin/convert -colors 100 +append sla slb slc sld sle slf
slg slh sli slj slk sll example_func2highres.gif ; /bin/rm -f sla slb
slc sld sle slf slg slh sli slj slk sll
Finished registration at Tue Dec 13 13:35:57 2005
Finished FEAT at Tue Dec 13 13:35:57 2005
To view the FEAT report point your web browser at
d:/mikeData/testing/mike_dec13/normal/left2.feat/report.html
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