Hi - can you do the following for me
echo $FSLMACHINELIST
echo $FSLREMOTECALL
for i in $FSLMACHINELIST; do $FSLREMOTECALL $i hostname;done
and tell me the reslut of each
Thanks
T
On Tue, 12 Jul 2005, Jeff Stevenson wrote:
> hi all, for those of you more experienced in cluster computing i am
> having trouble testing fsl on a cluster here at uw.
> we have a sungrid 60 cpu system with alex korb's feat multithreaded tcl
> plugin (thanks alex for permission to test) installed.
> i wanted to test bedposting and feat to see speed gains and fsl is not
> able to see the addl cpus. the FSLMACHINELIST
> and FSLREMOTECALL are not being set up correctly. below is the way the
> cluster admin recommended setting it up
> but fsl is not happy. i would be happy to go into the gory details off
> list since this is side issue for most. how do i get
> fsl to see the cpus on a dynamically allocated system.
>
> cheers jeff
>
> feat script:
>
> #$ -S /bin/sh
> #$ -cwd
> #$ -l virtual_total=5.0G
> #$ -hard -l mem_total=3.0G
> #$ -m bea
> #$ -V
> #$ -pe mpich 2-6
>
> FSLMACHINELIST=`cat ${TMPDIR}/machines | xargs echo`
> FSLREMOTECALL=${TMPDIR}/rsh
> export FSLMACHINELIST FSLREMOTECALL
>
> /mnt/local/fsl/bin/feat_model design
>
> and for dti:
>
> #$ -S /bin/sh
> #$ -cwd
> #$ -l virtual_total=5.0G
> #$ -m bea
> #$ -V
> #$ -hard -l mem_total=3.0G
> eddy_correct fM_0001 data 1
> avwroi data nodif 0 1
> bet nodif nodif_brain_mask1
> avwmaths nodif_brain_mask1 -bin nodif_brain_mask
> cat << END | qsub -pe mpich 2-10
> #$ -cwd
> #$ -l virtual_total=5.0G
> #$ -m bea
> #$ -V
> FSLMACHINELIST=`cat ${TMPDIR}/machines | xargs echo`
> FSLREMOTECALL=${TMPDIR}/rsh
> export FSLMACHINELIST FSLREMOTECALL
> bedpost ~/DTI/DTILD_3139
>
--
-------------------------------------------------------------------------------
Tim Behrens
Centre for Functional MRI of the Brain
The John Radcliffe Hospital
Headley Way Oxford OX3 9DU
Oxford University
Work 01865 222782
Mobile 07980 884537
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