Very keen to see melodic output, but when I run the program (XP running
Cygwin, 1 Gig RAM), the html report file has no components! I'm trying to
evaluate a 4-D dicom format, TR=2s, 300 volumes.
Any suggestions would be appreciated.
The program is clearly crunching on data, then generates the following
files:
example_func.nii.gz (462 KB)
filtered_func_data.nii.gz (185,942 KB)
melodic.exe.stackdump (1 KB)
The data in the big file above looks nicely extracted and aligned. But
there is no report on any components.
...and these text files...
Melodic.log:
Melodic Version ln(11)
/usr/local/fsl/bin/melodic -i filtered_func_data -o c:/Subject13_4-
D/43031405_4_1+.ica -v --nobet --bgthreshold=10 --tr=2.0 -d 0 --
mmthresh=0.5 --report
---------------------------------------------
Melodic results will be in c:/Subject13_4-D/43031405_4_1+.ica
Reading data file filtered_func_data ... done
Create mask ... done
Report.log:
/usr/local/fsl/bin/avwroi c:/Subject13_4-D/43031405_4_1 example_func 150 1
/usr/local/fsl/bin/slicetimer -i c:/Subject13_4-D/43031405_4_1 --
out=prefiltered_func_data_st -r 2.0
/usr/local/fsl/bin/mcflirt -in prefiltered_func_data_st -out
prefiltered_func_data_mcf -refvol 150
/usr/local/fsl/bin/betfunc prefiltered_func_data_mcf
prefiltered_func_data_bet
/usr/local/fsl/bin/ip prefiltered_func_data_bet filtered_func_data 10 -s
1.27388535032 -t 25.0 -1
THRESHOLD 63.033425
rm -rf prefiltered_func_data*
/usr/local/fsl/bin/melodic -i filtered_func_data -o c:/Subject13_4-
D/43031405_4_1+.ica -v --nobet --bgthreshold=10 --tr=2.0 -d 0 --
mmthresh=0.5 --report
Melodic Version ln(11)
Melodic results will be in c:/Subject13_4-D/43031405_4_1+.ica
Reading data file filtered_func_data ... done
Create mask ... done
Signal 6
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