Hi - I suspect that this image is too big for the amount of swap that you
have - it sounds like FAST is outputting some image(s) but before
managaing to complete the whole process (e.g. outputting other optional
outputs or doing PVE estimation) it's running out of RAM/SWAP.
Cheers.
On Fri, 11 Mar 2005, Lee, Sang wrote:
> Actually, when I run FAST on prompt with verbose set to 5, I see that
> with 512x512 image, it spits out segmented file after around 6 main
> iteration, but it continues to do further iteration, instead of stopping
> FAST. Do you know what's going on? Thanks for your help.
>
> Aaron
>
> ________________________________
>
> From: Mark Jenkinson [mailto:[log in to unmask]]
> Sent: Fri 3/11/2005 4:52 AM
> To: [log in to unmask]
> Subject: Re: [FSL] Window XP
>
>
>
> Dear Aaron,
>
> Yes, we now support both NIfTI-1 and Analyze data formats
> (on all platforms). This is fully described in the FSL FAQ:
> http://www.fmrib.ox.ac.uk/fslfaq/#general_format
> You can customise it to produce Analyze only as described in
> http://www.fmrib.ox.ac.uk/fsl/fsl/downloading.html
>
> However, the new nifti format is going to be supported by
> many packages in the near future and should be better for
> sharing data between sites and packages. I believe that mricro
> already supports the nifti format, and FSLView obviously does.
>
> All the best,
> Mark
>
>
>
> Lee, Sang wrote:
>
> > I installed FSL tools to Windows XP (cygwin too, of course).
> > Seems like installation was successfully done.
> >
> > I executed (from GUI) BET and FAST, inputing 'analyze' formatted
> > image, but it's doing something I don't recognize.
> > Process is in "Not responding" status, and if I stop it, it spits out
> > *.nii file. This happens in both BET and FAST.
> > Those files have .gz extension if I look at them from file open dialog
> > of FSL tools.
> > Do we have to used different image type to work in Windows XP?
> > I thought we have to use analyze format as we did in Linux.
> > I used analyze formatted image that was created with MRICRO from LINUX
> > (I just transferred it to this computer).
> > Am I doing something wrong here?
> >
> > Computer has 3GHz pentium 4 processor with 1GB of RAM.
> >
> > Thank you.
> >
> > Aaron
> >
> >
>
--
Stephen M. Smith DPhil
Associate Director, FMRIB and Analysis Research Coordinator
Oxford University Centre for Functional MRI of the Brain
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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