Hi FSL Gurus,
BETpremask give much better output than BET in our 3T t1 datasets. BET
leaves on some images large amounts of non-brain tissue.
question 1: Is brain volume on the BETpremask output changed?
question 2: Can I change BET input parameters (ie -f and -g and -c) in the
BETpremask script? Newbie that I am to FSL scripts, I don't see the BET
command line in the BetPremask script, compared say to the BETALL script.
question 3: One of our ultimate goals is to use SIENA. If BETpremask is the
beest option for our data, is there a way to pass BETpremask output to
SIENA? Substitute BETpremask for BET in script?
TIA,
Rob
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