This normally means that one of the files in the reg subdirectory, or one
of the symbolic links in there to files, has gotten broken. Can you do:
avwinfo <featquerymaskimage>
and then
cd <featdir>/reg
avwinfo standard
Cheers, Steve.
On Tue, 23 Aug 2005, Dost Ongur wrote:
> Hello,
> I am using featquery to extract PEs from 30 FEAT directories. I created a
> mask in standard space (from a cluster of activation). When I set up
> featquery, it gives me the appropriate PE, COPE etc options so I know it is
> reading the design. But when I run it, I get an error message:
> "Error - mask size doesn't match any of the images in the FEAT directory"
> before it even creates a Featquery directory.
>
> I know my mask is in standard space, I can overlay it on the avg152T1 brain.
> Also, all of the FEAT directories have a reg/ directory with the
> appropriate standard2example_func files etc.
>
> This is a procedure I have done hundreds of times in the past, but not since
> installing FSL 3.2.
>
> What am I missing here?
>
> Thanks,
> Dost
>
--
Stephen M. Smith DPhil
Associate Director, FMRIB and Analysis Research Coordinator
Oxford University Centre for Functional MRI of the Brain
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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