Dear Kamran,
the changes you apply to image orientation with SPM5s "reorient" button
will only be visible in programs that fully support the Nifti
or Analyze+.mat file format. This should work for FSL, FreeSurfer... but
not for programs like mricro, that do not read the voxel-to-world
coordinate mapping from .mat files. If you want to see them in mricro as
you do in SPMs "world space" view, you have to reslice them - there were
many posts to the mailing list about this topic.
On Fri, 14 Oct 2005, kamran kazemi wrote:
> i want to change the orintation of the 3D images on SPM5b, i do this and
> change the orientation todesierd orientation, but the problem arise when
> iwant to save the changes,
>
> i do this with click on the "reoient image" button,
> but i couldn't see the changes on the MRIcro, also i could see this
> changes on the SPM show
>
> Kind Regards
> kamran
>
>
> ---------------------------------
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--
Volkmar Glauche
-
Department of Neurology [log in to unmask]
Universitaetsklinikum Freiburg Phone 49(0)761-270-5331
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