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SPM  2005

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Subject:

Updates for SPM5 (Revision 392)

From:

John Ashburner <[log in to unmask]>

Reply-To:

John Ashburner <[log in to unmask]>

Date:

Wed, 21 Dec 2005 18:47:01 +0100

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (159 lines)

There is a new set of fixes available for SPM5, which will update your version 
to Revision 392.  These can be downloaded from our ftp server at:
        ftp://ftp.fil.ion.ucl.ac.uk/spm/spm5_updates

Download the patches from the Updates_392.tar.gz file.  392 indicates the 
revision number.  A list of changes is available in the Updates_README.txt 
file.  A more detailed list can be found in Updates_Diff.txt.  The 
Updates_Log.xml is an XML file, that may be useful some time.  The actual 
changes made since Revision 377 (the previous set of updates) and 392 (this 
set) are: 

------------------------------------------------------------------------
r378 | will | 2005-12-13 17:51:21 +0000 (Tue, 13 Dec 2005) | 1 line
Changed paths:
   M /trunk/man/faces/face.tex
   A /trunk/man/faces_group
   A /trunk/man/faces_group/Fdisp.jpg
   A /trunk/man/faces_group/Ftemp.jpg
   A /trunk/man/faces_group/can_weighted_fir.jpg
   A /trunk/man/faces_group/face_group.aux
   A /trunk/man/faces_group/face_group.bbl
   A /trunk/man/faces_group/face_group.blg
   A /trunk/man/faces_group/face_group.dvi
   A /trunk/man/faces_group/face_group.log
   A /trunk/man/faces_group/face_group.tex
   A /trunk/man/faces_group/fir_covariance.jpg
   A /trunk/man/faces_group/fir_design.jpg
   A /trunk/man/faces_group/fir_results.jpg
   A /trunk/man/faces_group/informed_covariance.jpg
   A /trunk/man/faces_group/informed_design.jpg
   A /trunk/man/faces_group/informed_results.jpg
   A /trunk/man/faces_group/informed_t.jpg
   A /trunk/man/faces_group/main_basis.jpg
   A /trunk/man/faces_group/nullall.jpg
   A /trunk/man/faces_group/nullcan.jpg
   A /trunk/man/faces_group/t1.jpg
   A /trunk/man/faces_group/t1_res.jpg
   M /trunk/man/manual.tex

Added chapter to manual on 2nd-level fMRI analysis
------------------------------------------------------------------------
r379 | will | 2005-12-13 18:01:38 +0000 (Tue, 13 Dec 2005) | 1 line
Changed paths:
   M /trunk/man/faces_group/face_group.tex

img ref changed
------------------------------------------------------------------------
r380 | john | 2005-12-13 18:10:22 +0000 (Tue, 13 Dec 2005) | 2 lines
Changed paths:
   M /trunk/man/faces/face.tex
   M /trunk/man/faces_group/face_group.aux
   M /trunk/man/faces_group/face_group.tex
   M /trunk/man/manual.pdf
   M /trunk/man/manual.tex

Stuff for the manual

------------------------------------------------------------------------
r381 | guillaume | 2005-12-13 20:41:02 +0000 (Tue, 13 Dec 2005) | 1 line
Changed paths:
   D /trunk/man/faces_group/face_group.aux
   D /trunk/man/faces_group/face_group.bbl
   D /trunk/man/faces_group/face_group.blg
   D /trunk/man/faces_group/face_group.dvi
   D /trunk/man/faces_group/face_group.log
   M /trunk/man/faces_group/face_group.tex

Removed temporary TeX files + SVN properties
------------------------------------------------------------------------
r382 | john | 2005-12-15 11:42:05 +0000 (Thu, 15 Dec 2005) | 10 lines
Changed paths:
   M /trunk/spm_config_factorial_design.m

Included Volkmar Glauche's patches of spm_config_factorial_design.m, 
which changes some things in the "flexible factorial" section:
* most of the "Scans" entries are now mandatory
* "Subjects" and "Specify all" are now alternatives and not siblings
* "Main effects" and "Interactions" are now members of one repeat node 
* Fixed the gmsca* bug mentioned on the SPM list
All these changes should make it easier to enforce input integrity 
before a batch can be run.


------------------------------------------------------------------------
r383 | guillaume | 2005-12-15 15:24:51 +0000 (Thu, 15 Dec 2005) | 1 line
Changed paths:
   M /trunk/spm_config_factorial_design.m

Work on masking for 2nd level analyses
------------------------------------------------------------------------
r384 | will | 2005-12-15 19:18:41 +0000 (Thu, 15 Dec 2005) | 1 line
Changed paths:
   M /trunk/spm_config_factorial_design.m

Minor bug-fixes re gmscaling and specification of main effects + more help 
comments
------------------------------------------------------------------------
r385 | jeremie | 2005-12-16 10:47:52 +0000 (Fri, 16 Dec 2005) | 1 line
Changed paths:
   M /trunk/spm_eeg_inv_evoked.m

bug fixed
------------------------------------------------------------------------
r386 | will | 2005-12-16 10:48:02 +0000 (Fri, 16 Dec 2005) | 1 line
Changed paths:
   M /trunk/spm_config_factorial_design.m

silly bug in help txt fixed
------------------------------------------------------------------------
r387 | klaas | 2005-12-17 18:31:23 +0000 (Sat, 17 Dec 2005) | 1 line
Changed paths:
   M /trunk/spm_hrf.m

spm_hrf: added a try/catch to the definition of fMRI_T to enable batching 
(this used to crash in SPM5 because defaults.stats.fmri.t is no longer 
defined in the defaults file but is only defined when one uses the GUI)
------------------------------------------------------------------------
r388 | will | 2005-12-19 16:07:16 +0000 (Mon, 19 Dec 2005) | 1 line
Changed paths:
   M /trunk/man/manual.pdf
   M /trunk/man/manual.tex
   A /trunk/man/pet
   A /trunk/man/pet/pet.tex

Added new chapter to manual on analysing PET data
------------------------------------------------------------------------
r389 | jeremie | 2005-12-20 12:17:18 +0000 (Tue, 20 Dec 2005) | 1 line
Changed paths:
   M /trunk/spm_eeg_inv_BSTfwdsol.m
   M /trunk/spm_eeg_inv_evoked.m
   M /trunk/spm_eeg_inv_getmasks.m
   M /trunk/spm_eeg_inv_getmeshes.m
   M /trunk/spm_eeg_inv_mesh_ui.m
   M /trunk/spm_eeg_inv_meshing.m
   M /trunk/spm_eeg_inv_spatnorm.m

Updates reg. nifti and matlab7 compatibility
------------------------------------------------------------------------
r390 | jeremie | 2005-12-20 14:54:29 +0000 (Tue, 20 Dec 2005) | 1 line
Changed paths:
   M /trunk/spm_eeg_inv_evoked.m

bug fixed
------------------------------------------------------------------------
r391 | will | 2005-12-21 10:12:27 +0000 (Wed, 21 Dec 2005) | 1 line
Changed paths:
   M /trunk/spm_spm_vb.m

Added reference to help text of spm_spm_vb
------------------------------------------------------------------------
r392 | john | 2005-12-21 17:45:58 +0000 (Wed, 21 Dec 2005) | 3 lines
Changed paths:
   M /trunk/spm_dicom_convert.m

Modified the DICOM conversion routines in order to change the voxel-to-world 
mapping according to Pedro Valdés Hernández's email to the list on 16th Dec, 
2005.
------------------------------------------------------------------------

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