Hi Again,
As scripting with Analyze and Nifti names isn't completely straightforward
and that this might be useful in general, I've written the script to apply
the matrices. It is included as a text file attachment.
Note that the -paddingsize option to flirt is quite crucial in getting the
same endslice effects as mcflirt.
Let me know if you have any problems with this.
All the best,
Mark
P.S. don't use ../ in any of the filenames. It requires a few more lines to
make this work.
|