hello all,
(1) is there a way to apply the results of mcflirt to another 4D volume?
in my case, i have three 4D volumes. i wish to run mcflirt on the first volume. i would then like to
apply the result of mcflirt to the other two volumes.
one way would be rather brute force:
(a) break the 4D volume into its 3D sub-volumes;
(b) apply the relevant .mat file to its associated 3D sub-volume;
(c) merge the transformed 3D sub-volume into a new 4D volume.
(2) i am wondering why the -mats switch is not set by default for mcflirt? the .mat files provide
more useful information than just the .par file.
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