Thanks, the file is holidays.tar.gz
> -----Original Message-----
> From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On
Behalf
> Of Stephen Smith
> Sent: Friday, December 23, 2005 1:07 PM
> To: [log in to unmask]
> Subject: Re: [FSL] Incomplete mask
>
> > 1. Is there a way to get BET to truly mask out ALL of the non-brain
> > tissue?
>
> Impossible to know without seeing an example - if you want to upload
an
> example we can have a quick look:
>
> Please upload the files in a single compressed tarfile to
> http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
> and then email me the upload ID.
>
> > 2. If I am forced to make edits using FSLView, is there a way to
> > only manually draw ROIs on a portion of the slices (every other,
every
> > third, etc.) and have the program interpolate and join these
> > discontinuous ROIs into a single mask? This could significantly cut
the
> > time required to mask out images.
>
> Sure - you could use some combination of downsampling, editing and
then
> re-upsampling (using flirt) or else maybe the morphology options in
> avwmaths to fill in between slices.
>
> Cheers, Steve.
>
> >
> >
> >
> > Thanks,
> >
> >
> >
> > Michael
> >
> >
> >
> >
>
> --
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
>
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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