got the answer by trolling around on the listserve...
here's what I did:
cp $FSLDIR/bin/feat my_feat
changed this to call my_feat.tcl
and edited my_feat.tcl
thanks!
R
________________________
Robin Goldman, Ph.D.
Hatch Center for MR Research
Columbia University
710 W. 168th Street, NIB-1
New York, NY 10032
(212) 342-0867
On Sep 22, 2005, at 2:44 PM, Robin Goldman wrote:
> Hi there,
>
> So we found a work-around to avoid the segmentation fault in flirt --
> if we run the registration
> with mutual information, it works well.
>
> I would like to run feat from a script such that flirt uses mutual
> information, and it seems to do
> this, I need to change the flirt command line in the feat.tcl file. Is
> this true? Or is there another less
> pernmanent way to change the cost function? (Many folks use this
> computer, and I don't want to
> force everyone to run it this way.)
>
> Thanks.
>
> Best,
> Robin
>
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