I will send the recommendation for the LONI Debabeler - it's a bit
tricky to set up the translations and somewhat finicky about specifics
of the file formats, but it's incredibly flexible, and java-based so it
will run just about anywhere.
cheers
russ
On Mar 21, 2005, at 8:09 AM, Nasim wrote:
> Please have a look at this link for LONI Debabeler software:
> http://www.loni.ucla.edu/Software/Software_Detail.jsp?software_id=11
>
> LONI Debabeler manages the conversion of imaging data from one file
> format and convention to another. It consists of a graphical user
> interface to visually program the translations, and a data translation
> engine to read, sort and translate the input files, and write the
> output files to disk.
>
>
> SUPPORTED FILE FORMATS AND INCLUDED TRANSLATIONS:
>
> Read (decode)
> Write (encode)
> Anonymizations
> Translations
>
> ANALYZE 7.5
> DICOM
> GE 5.0
> MedX contour/bitmap
> MINC
> Raw data
> UCF
> XML
> AFNI
> NIFTI
> AFNI
> ANALYZE 7.5
> DICOM
> GE 5.0
> MINC
> SQL
> UCF
> XML
> NIFTI
> ANALYZE 7.5
> DICOM
> GE 5.0
> MINC
> Siemens Mosaic DICOM
> ANALYZE7.5-> AFNI
> ANALYZE 7.5 -> DICOM
> ANALYZE 7.5 -> MINC
> ANALYZE 7.5 -> NIFTI
> DICOM -> MINC
> DICOM -> NIFTI
> GE 5.0 -> DICOM
> GE 5.0 -> MINC
> GE 5.0 -> ANALYZE 7.5
> GE 5.0 -> NIFTI
> MINC -> ANALYZE 7.5
> MINC -> DICOM
> MINC -> NIFTI
> Raw data -> ANALYZE 7.5
> Multi-frame DICOM -> MINC
> Multi-frame DICOM -> NIFTI
> Siemens Mosaic DICOM -> ANALYZE 7.5
> Siemens Mosaic DICOM -> NIFTI
>
> Best,
> Nas
>
> Dianne Patterson <[log in to unmask]> wrote:
> Afni's tools, especially to3d, should also handle all three formats and
> converting between them.
>
> -Dianne
>
> Dianne K. Patterson Ph.D.
> Psychology, Room 217E
> 626-4571
> Cognition and NeuroImaging Labs
> University of Arizona
> Tucson, AZ
>
>
> Quoting "Stephen J. Fromm" :
>
> > On Sun, 20 Mar 2005 16:17:34 +0000, Johannes Gerber > DRESDEN.DE>
> wrote:
> >
> >> dear SPMers,
> >>
> >> trying to enjoy the best of all worlds I used Brain Extraction Tool
> from
> >> FSL to get brainy brains. then I got stuck when trying to
> reintroduce the
> >> extracted volumes into SPM (which I know best). does anybody have
> an idea
> >> how to convert NIFTI-images to ANALYZE? neither MRIcro nor SPM would
> > digest
> >> it without graet unease.
> >
> > You! can direct FSL to output Analyze and not NIFTI.
> >
> > (Assuming you're using UNIX or LINUX and csh or tcsh...)
> >
> > Create a directory
> > .fslconf
> > in your home directory.
> >
> > Create a file named
> > fsl.csh
> > consisting of the single line
> > setenv FSLOUTPUTTYPE ANALYZE
> > (For safety's sake, make sure you return to the next line; sometimes
> not
> > having a file end on a new line causes problems with these files).
> >
> > Then make sure that you log out and back in (or similar step to
> ensure
> > this file is actually read). The variable is correctly read if you
> see it
> > after typing
> > printenv | grep -i fsl
> > (at least this command works on my system...)
> >
> >
> >
> >
> >> thanks a lot!
> >>
> >> Johannes
>
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---
Russell A. Poldrack, Ph.d.
Assistant Professor
UCLA Department of Psychology
Franz Hall, Box 951563
Los Angeles, CA 90095-1563
phone: 310-794-1224
fax: 310-206-5895
email: [log in to unmask]
web: www.poldracklab.org
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