> I am new to SPM and have encountered a problem when normalizing my T1
> images with the T1.mnc template. My anatomical images become tilted to the
> right in the cornonal plane, and therefore the resliced images are taken at
> an angle. I am using a 1.5T philips intera scanner and wondered if the
> conventions are different to the defaults in SPM? I would be most grateful
> of any help to solve this issue.
Are they tilted to the right after spatial normalisation? If so, how did you
do the normalisation? Was it by matching your fMRI to the EPI template? Did
you coregister the T1 with the fMRI data first? Try the Check Reg button on
your unnormalised data (T1 and fMRI). If they are not in register before
spatial normalisation, then they will also not be in register afterwards.
Best regards,
-John
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