Hi everybody,
I've come across a problem that is similar to the one Thomas Mierdorf had
posted previously. I'm trying to realign a series of PET frames using
mcflirt and the -meanvol and -plots option, which results in an "Image
Exception : #5 :: Out of Bounds (time index)" error in the final iteration
of the second, realign-to-mean process.
The command line is:
mcflirt -report -plots -meanvol -in filename -out filename_mcf
If I don't use the -plots option, everything works, but I'd really like to
be able to check how much patient movement there is in my time series.
It seems like there's a problem with the generation of the transformation
parameters file.
The output of avwhd, avwstats -r -R can be found at
http://www.mpifnf.de/~johannes/mcflirterror.txt
I'd appreciate any help with this!
Thanks
Johannes
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