Hi
you can also use 'avwswapdim' to change the orientation
cheers
christian
On 2 Aug 2004, at 14:16, Christopher Bailey wrote:
> Dear Dr. med. Kraemer,
>
> If you open such an analyze file in mricro, you will no doubt see the
> same: the axes have been rotated. The best thing to do is to open the
> converted analyze file in mricro and select File->Save as...
> [rotate/clip...]. In the little window that pops up, try changing the
> Format from Axial to Sagittal or Coronal (your acquisition has most
> likely been other than axial slices). Then click the Preview button and
> make sure you see the images as mricro tells you: "If you have
> correctly...". Finally you have to make sure left is where it should be
> (in the case of mricro and fslview: left is right)...
>
> Good luck,
>
> Chris
> --
> Christopher Bailey <[log in to unmask]>
> MSc Physicist (FMRI/MEG research)
> Center for Functionally Integrative Neuroscience
> Aarhus University Hospital, Denmark
> http://www.cfin.au.dk/
>
>
> On Mon, 2004-08-02 at 12:52, Matthias Kraemer wrote:
>> Loading a segmented brain into FSLVIEW after conversion from DICOM to
>> ANALYZE in MRICRO I get the wrong orientation of the brain, i. e. x=y,
>> y=z, and z=x. What went wrong?
>>
>>
>>
>> Dr. med. Matthias Kraemer
>> Neurologische Klinik
>> Universitätsklinikum Düsseldorf
>> Heinrich-Heine-Universität
>> Moorenstr. 5
>> D-40225 Düsseldorf
>> Tel: +49-211-81-17038
>> Fax: +49-211-81-17038
>> Email: [log in to unmask]
>>
>>
>>
--
Christian F. Beckmann
Oxford University Centre for Functional
Magnetic Resonance Imaging of the Brain,
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
Email: [log in to unmask] - http://www.fmrib.ox.ac.uk/~beckmann/
Phone: +44(0)1865 222782 Fax: +44(0)1865 222717
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