Hi Jen,
I tried converting the files back to AFNi through the global desktop but it
doesn't recognize that they've been talairached. Sigh. We're trying your
suggestion now and hope for success.
Thanks,
Katherine
on 4/7/04 10:12 AM, Jennifer Bramen at [log in to unmask] wrote:
> Hi Katherine,
>
> Have you used to3d to convert the files into AFNI .HEAD & .BRIK files?
> Here is the command I use:
>
> to3d -prefix func -time:zt <number slices> <number measurements> <TR>
> zero filtered_func_data.hdr
>
> # beware: this assumes ANALYZE images are LPI, which is wrong for fsl
>
> I hope this helps.
>
> Jen
>
>
> On Apr 7, 2004, at 9:33 AM, Katherine Turner wrote:
>
>> Hi Folks,
>>
>> We have used FSL for the preprocessing of block design data (BET,
>> SUSAN,
>> FLIRT and MCFLIRT). We now want to take the FEAT output and do
>> 3ddeconvolve
>> in AFNI. We can view the files in AFNI but we are unable to get the
>> files
>> to concatenate. We get error messages indicating that the file cannot
>> be
>> read. Has anyone else experienced this problem? Is there a simple
>> way to
>> concatenate in FSL and then move the files to AFNI to do 3ddeconvolve?
>>
>>
>> Thanks,ANY help you can give will be greatly appreciated.
>> Katherine
>>
>
|