Hi Alex
> are output in the NIFTI format. I have 2 questions:
> 1 - Is there any way of specifying the output file format (I want to keep
> it as analyze)?, or is there some program/script that can be run to
> convert a whole batch of NIFTI files to analyze format at once?
Yes - there is an environment variable called FSLOUTPUTTYPE
which you can set in your .profile or your fsl.sh etc.
see
http://www.fmrib.ox.ac.uk/fsl/fsl/formats.html
This lets you choose the output file type for all fsl programs.
Alternatively, you can use avwchfiletype to change the filetype
of specific images.
> 2 - Is this the same situations with all the FSL programs in the new
> version?
Yes (as above)
Cheers
Tim
> Thanks,
> Alex
>
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