Hi - it is most likely that you didn't get a complete download - you
should probably try downloading the new version from scratch. Also, check
that you have changed your environment setup according to the new
instructions on the "running" web page. If that doesn't work, what version
of windows are you running?
Cheers, Steve.
On Sat, 30 Oct 2004, Arvind caprihan wrote:
> On Sun, 5 Sep 2004 17:56:51 +0800, TONG Shan <[log in to unmask]> wrote:
>
> >Hi all
> >
> >I've just installed cygwin and fsl on win2000(2.4G 512M). With no
> >experience of Unix, I now have some small questions.
> >
> >1.When I lauch fsl, the GUI window appears, and there's another window
> >called fsl, showing this message:
> >Your group is currently "mkpasswd". This indicates that the /etc/passwd
> >(and possibly /etc/group) files should be rebuilt. See the man pages for
> >mkpasswd and mkgroup then, for example, run mkpasswd -l [-d] > /etc/passwd
> >mkgroup -l [-d] > /etc/group Note that the -d switch is necessary for
> >domain users.
> >
> >Can anyone tell me what this means?
> >
> >2. I want to use the avwmerge function, but at first the system always
> >shows that
> > $ avwmerge -t out4d E:/sara/1/session/snrr1D*.hdr
> >AvwOpen: Error while opening header!: No such file or directory
> >avwmerge: No such file or directory
> >
> >seems the system can't locate the input file even I provide the directory.
> >Is it true that under cygwin all input files must be under the
> >cygwin/usr/local directory? And the output file will be saved in this
> >directory by default? i'm really confused about this.
> >
> >Thanks in advance for any help.
> >
> >Best,
> >
> >Sara
>
> All,
> I have the same problem as mentioned in Tong's email. I am running FSL on
> cygwin/Windows XP. When I run:
> avwstats -r structural
>
> I get a message that can't open header file, bad header info, failed to
> open file. This happens even if I give the full file name with the path.
> Although, avwhd
> can read the header and fslview can show the image. If I run bet I get the
> same error message as above.
>
> The older version of FSL was working well in CYGWIN.
>
>
> Arvind caprihan
>
Stephen M. Smith DPhil
Associate Director, FMRIB and Analysis Research Coordinator
Oxford University Centre for Functional MRI of the Brain
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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