Mr.Heidi,
Thanks for your reply.My Images do contain a lot of
neck.If you don't mind can you specify more details
about managing the coordinates of the brain centre.
Thanks!
-Hima.
--- Heidi Johansen-Berg <[log in to unmask]> wrote:
> This can occur if your structural images contain
> lots of neck. By
> default, BET assumes that the centre of the brain is
> in the centre of
> the field of view. If this is not the case then you
> can tell it the
> co-ordanates of the brain centre is by adding -c x y
> z to your command
> line. (type bet with no arguments to get full usage
> for bet).
>
> Heidi
>
> Himachandra Chebrolu wrote:
>
> >Hi,
> >I'm a newbie to this software.I've started using it
> >only a couple of weeks back.I'm trying to extract
> the
> >brain.But the problem I'm having is it is picking
> up
> >the tongue and other fat matter present in the
> >brain.Is there any way I control the algorithm so
> that
> >it will also remove the fat(high intensity) and
> also
> >recognize the morphological structure(i.e.low
> >intensity parts like tongue etc which are
> >connected).Hope someone will be able to help.
> >Thanks is advance!
> >-Hima.
> >
> >__________________________________
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>
> --
> Dr Heidi Johansen-Berg
> Wellcome Trust Training Fellow
> Oxford Centre for Functional Magnetic Resonance
> Imaging of the Brain
> John Radcliffe Hospital
> Headington
> Oxford OX3 9DU
>
> http://www.fmrib.ox.ac.uk/~heidi
>
> Tel: 01865 222782
> Fax: 01865 222717
> email: [log in to unmask]
=====
Himachandra Chebrolu
University Of Kentucky
Lexington,KY-40506
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