Hi,
the higher -level analysis worked now. Thank you.
But I have another question about fdt.
I have processed data from Philips scanner. And running the eddy current, dtifit and bedpost have been without errors. Bedpost datacheck is not giving me errors.
The bvals are:
0 1000 1000 1000 1000 1000 1000
And the bvecs:
0 0 1 0 0.70710678 0 0.70710678
0 1 0 0 0.70710678 0.70710678 0
0 0 0 1 0 0.70710678 0.70710678
But the lines (and colours) watching with fsl view are not right. I have been told that it can be the difference of how the vectors are acquired and I ran all the possible changes in vector directions.
Putting negative in front of x or x/y or x/z etc. And also turning the slices order from descending to ascending.
But in all cases the lines of main eigenvector are not right.
Is there somehing else what could I do?
Thank you for the help.
Christine
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