Although you've specified the registrations in your feat analsyis, you
still need to apply the transformations to the images if you want to
convert them from one space to another. For instance, if you want the EPI
data in structural space, then you'll need to use flirt to change the EPI
space file (such as a thresholded zstat):
flirt -in thresh_zstat1 -ref highres -applyxfm -init
reg/example_func2highres.mat -o zstat1_structural_space
Then you can overlay zstat1_structural_space on your highres structural in
fslview.
Hope this helps.
Joe
--------------------
Joseph T. Devlin, Ph. D.
FMRIB Centre, Dept. of Clinical Neurology
University of Oxford
John Radcliffe Hospital
Headley Way, Headington
Oxford OX3 9DU
Phone: 01865 222 738
Email: [log in to unmask]
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