Thank you for your advice.
It runs smoothly until now.
--- Mark Jenkinson <[log in to unmask]> wrote: > Hi,
>
> No need to recompile - the file you download is a
> redhat binary.
> All other specs look fine.
>
> Hence all you need to do is:
> 1 - download the file from the website (as
> flirt_noopt)
> 2 - mv $FSLDIR/bin/flirt $FSLDIR/bin/flirtopt
> 3 - mv flirt_noopt $FSLDIR/bin/flirt
> 4 - chmod a+x $FSLDIR/bin/flirt
>
> You may need an administrator to do the last 3
> steps, depending
> on whether you have permission to write to $FSLDIR
> or not.
>
> All the best,
> Mark
>
>
>
> JONGCHUL YOUN wrote:
>
> >Hi.
> >
> >Operating system : Redhat linux 9.0 (English
> version)
> >CPU: Intel Pentium IV 1GHz
> >RAM memory : 752MB
> >SWAP: 1.5GB
> >Hard disk : 35G (Using 28G)
> >monitor : syncmaster, Samsung
> >VGA card : NVIDIA GeForce 2MX
> >
> >Many Thanks.
> >
> >
> >
> >--- Mark Jenkinson <[log in to unmask]> wrote: >
> Hi,
> >
> >
> >>Could you please supply some details about the
> >>system you are
> >>running on. What operating system (include the
> >>version number - e.g.
> >>redhat 8),
> >>what cpu (e.g. Athlon 1800), how much RAM, how
> much
> >>swap space, how
> >>much disk space, etc etc.
> >>
> >> Mark
> >>
> >>
> >>On Thursday, January 8, 2004, at 03:35 am,
> JONGCHUL
> >>YOUN wrote:
> >>
> >>
> >>
> >>>Hi Mark.
> >>>
> >>>Thanks for your comment.
> >>>But, I'm not familiar with compiling linux.
> >>>I downloaded the file you mentioned. But, I could
> >>>
> >>>
> >>not
> >>
> >>
> >>>handle this.
> >>>Could you guide me some detail?
> >>>
> >>>Many thanks.
> >>>
> >>>
> >>>--- Mark Jenkinson <[log in to unmask]> wrote: >
> >>>
> >>>
> >>Hi,
> >>
> >>
> >>>>Are you running this on a linux machine?
> >>>>There appears to be a problem with FLIRT
> compiled
> >>>>
> >>>>
> >>on
> >>
> >>
> >>>>Redhat 8 and 9. If
> >>>>you are getting segmentation faults when running
> >>>>flirt, then download
> >>>>the non-optimised version from
> >>>>www.fmrib.ox.ac.uk/fsldownloads/flirt_noopt
> >>>>
> >>>>
> >>>>
>
>><http://www.fmrib.ox.ac.uk/fsldownloads/flirt_noopt>
> >>
> >>
> >>>>which, although it
> >>>>runs slower, should not crash. In the unlikely
> >>>>
> >>>>
> >>event
> >>
> >>
> >>>>that it still
> >>>>crashes, please post the details on the FSL
> email
> >>>>list.
> >>>>
> >>>>All the best,
> >>>> Mark
> >>>>
> >>>>
> >>>>Jong Chul Youn wrote:
> >>>>
> >>>>
> >>>>
> >>>>>Hi.
> >>>>>
> >>>>>I set up FSL and run sienax for my 3D saggital
> >>>>>
> >>>>>
> >>SPGR
> >>
> >>
> >>>>>MRI data.
> >>>>>I preprocessed using ANALYZE and input analyze
> >>>>>
> >>>>>
> >>7.5
> >>
> >>
> >>>>>file.
> >>>>>Many cases were done smoothly,but some of 3 D
> >>>>>
> >>>>>
> >>data
> >>
> >>
> >>>>>showed error like this;
> >>>>>
> >>>>>
> >>>>>[ocalhosyjc0811@lt ~]$ sienax
> >>>>>/home/yjc0811/sampleT1T2/PRD/466/T1/0466 -r
> >>>>>Could not open matrix file
>
>>>>>/home/yjc0811/sampleT1T2/PRD/466/T1/04662tal.mat
> >>>>>dc: stack empty
> >>>>>dc: stack empty
> >>>>>dc: stack empty
> >>>>>Could not open matrix file
>
>>>>>/home/yjc0811/sampleT1T2/PRD/466/T1/04662tal.mat
> >>>>>Cannot read input-matrix
> >>>>>Could not open matrix file
> >>>>>
> >>>>>
> >>>>
> >>>>
>
>>/home/yjc0811/sampleT1T2/PRD/466/T1/04662tal_inv.mat
> >>
> >>
> >>>>>Could not open matrix file
> >>>>>
> >>>>>
> >>>>
> >>>>
>
>>/home/yjc0811/sampleT1T2/PRD/466/T1/04662tal_inv.mat
> >>
> >>
> >>>>>Could not open matrix file
> >>>>>
> >>>>>
> >>>>
> >>>>
>
>>/home/yjc0811/sampleT1T2/PRD/466/T1/04662tal_inv.mat
> >>
> >>
> >>>>>dc: stack empty
> >>>>>dc: stack empty
> >>>>>dc: stack empty
> >>>>>dc: stack empty
> >>>>>988369.375000
> >>>>>
> >>>>>It might be registration error. But, I can't
> >>>>>
> >>>>>
> >>solve
> >>
> >>
> >>>>>this problem.
> >>>>>Could you guide me to solve this problem?
> >>>>>
> >>>>>=====
> >>>>>Jong Chul Youn, M.D
> >>>>>Department of Neuropsychiatry
>
=== message truncated ===
=====
Jong Chul Youn, M.D
Department of Neuropsychiatry
Kyunggi provincial Hospital for the Elderly
e-mail: [log in to unmask]
tel. 82-31-288-0417
fax. 82-31-288-0405
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