Thanks very much! This will be very useful for us.
Rick
On Aug 2, 2004, at 9:03 AM, Christopher Bailey wrote:
> Hi Rick,
>
>> From the mailing list archives:
>
> http://www.jiscmail.ac.uk/cgi-bin/webadmin?
> A2=ind0406&L=fsl&P=R7704&I=-1
>
>> 1) Is there any way of sparing reg_standard directories in higher
> level
>> analysis ?
>
> The "fix" is to open $FSLDIR/tcl/feat.tcl in a text editor and find all
> the lines with the command featregapply in them (there are 3, I
> believe). At the end of those lines you will find -c, for cleanup (see
> featregapply usage). Delete the -c's and you will have a "version" of
> Feat that saves normalised COPEs (and VARCOPEs) in a directory called
> reg_standard/stats within the first level .feat directory.
>
> You can run featregapply on any .feat directory, assuming you have run
> registration for it at first level. So you don't need to re-run your
> higher level analysis just to get to the normalised lower level cope
> images.
>
> Usage: featregapply <feat_directory>
>
> Best regards,
>
> Chris
> --
> Christopher Bailey <[log in to unmask]>
> MSc Physicist (FMRI/MEG research)
> Center for Functionally Integrative Neuroscience
> Aarhus University Hospital, Denmark
> http://www.cfin.au.dk/
>
> On Mon, 2004-08-02 at 13:31, Rick Hoge wrote:
>> We've been running group analyses and wanted to inspect the spatially
>> normalized statistical maps of individual subjects, but have had
>> trouble finding these.
>>
>> It seems necessary that at some point the individual subject maps
>> would
>> have been registered to standard space, but we can't find these maps
>> anywhere. Are they created in a temporary directory that is removed
>> at
>> the end of analysis? Is there a way to prevent the removal? I would
>> assume it is the cope images that are transformed - is this in fact
>> the
>> case?
>>
>> Thanks for any answers to these questions,
>>
>> Rick
>
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