Hi - if you edit fsl/tcl/feat.tcl and comment out all the calls to
featregapply then feat will neither create nor cleanup the reg_standard
directory, but just use whatever you leave there. That should do exactly
what you want then.
Cheers.
On Fri, 25 Jun 2004, Michal Kuniecki wrote:
> Hello,
>
> I decided to post my question again since I haven’t got any answer to my
> original posting. If I am asking for something too obvious just tell me
> where is it in the help files or in FSL web course. Thanks in advance. Below
> is my unanswered question.
>
>
> Hello Everybody,
>
> To start with the question I would like firstly to say that I have similar
> problem to that described by Ed Vessel from U. of Southern California.
> Namely I have only a limited number of slices taken from each subject. For
> that reason registration is quite poor and in the result I loose data from
> outermost slices because data from one or two subjects are missing. This is
> very frustrating and either SPM nor FSL have routines to calculate valid
> statistics from not complete set of data. Nevertheless Stephen Smith
> proposed partial solution to this problem – that is to run dilate command
> (avwmaths <input> -dil -dil <input>) on the images in reg_standard
> directory. Now my problem is that higher level analysis firstly creates such
> directories but afterwards it deletes them – so they appear to be temporary.
> It is feasible to create reg_standard directories manually of course but the
> problem stays the same, since higher level analysis will delete those
> directories anyway. Hence the questions:
> 1) Is there any way of sparing reg_standard directories in higher level
> analysis ?
> 2) If I create reg_standard directories manually will higher level analysis
> use them or it will create its own while deleting those created manually ?
>
> With best regards
>
> Michal Kuniecki Ph.D.
> Department of Psychophysiology
> Institute of Psychology
> Jagiellonian University
> Krakow, Poland
>
Stephen M. Smith DPhil
Associate Director, FMRIB and Analysis Research Coordinator
Oxford University Centre for Functional MRI of the Brain
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
|