---------- Forwarded message ----------
Date: Fri, 25 Jun 2004 12:05:37 +0200
From: Elia Stupka <[log in to unmask]>
To: Elia Stupka <[log in to unmask]>
Cc: Patrick Lemaire <[log in to unmask]>, [log in to unmask]
Subject: Re: Preliminary Ciona savignyi annotation and Ensembl website
Dear all,
please accept my apologies if you have tried to e-mail to
[log in to unmask] and got an error, I had forgotten it was a
closed list, not allowing mails from outside, so feel free in the
meantime to e-mail directly:
myself - [log in to unmask] - for general enquiries
Allison Soo - [log in to unmask] - for website related enquiries
Bala (Balamurugan Kumarasamy) - [log in to unmask] - for annotation
related enquiries
In a few days we should fix the mailing list problem
Thanks and regards
Elia Stupka
On 23 Jun 2004, at 18:06, Elia Stupka wrote:
> Dear all,
> (bcc: urochordate list)
>
> We have recently put up a preliminary Ensembl website of the
> annotation of Ciona savignyi at:
>
> http://www2.bioinformatics.tll.org.sg/Ciona_savignyi/
>
> This website provides all the usual views of data found on the Ensembl
> genome browser, including the data mining suite EnsMART. This is a
> preliminary annotation based on the current assembly on split
> haplotypes (thus most genes are in two copies). I would like to have
> your feedback on the website as well as the annotation to improve it
> further before its public release.
>
> Please note all genes that have been annotated with known names and
> descriptions can be found by using the search function, and of course
> you can find your genes by using the BLAST server within the website.
>
> We are particularly interested in finding out about mis-annotated
> genes, missing data, etc. so please send us your feedback about your
> "favourite genes".
>
> In the next few weeks we will be releasing another Ensembl website of
> our Ciona intestinalis annotation, and later in the year we will be
> providing a comparative website of the two species to browse
> orthologous regions in parallel, highlighting orthologous genes and
> conserved non-coding regions.
>
> Many thanks to Balamurugan Kumarasamy who was key in performing the
> annotation of both genomes, and Allison Soo who was key in setting up
> the Ensembl and EnsMart websites for this annotation.
>
> Thank you and regards to the urochordate community,
>
> Please send your feedback to [log in to unmask]
>
> Elia Stupka
>
> P.S. Please reply to the e-maila address above, since this mail is
> bcc:ed to all members of the urochordate mailing list who might not
> want to be disturbed with further communication
>
> ---
> Telethon Institute of Genetics and Medicine
> Via Pietro Castellino, 111
> 80131 Napoli
>
> Tel. +39 081 6132 335
> Fax. +39 081 6132 351
>
>
---
Telethon Institute of Genetics and Medicine
Via Pietro Castellino, 111
80131 Napoli
Tel. +39 081 6132 335
Fax. +39 081 6132 351
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