Dear Kiran,
I'm not the expert on flirt and perhaps Mark will correct me if I'm wrong,
but I believe the order of the columns in the *.par file is:
rotations in x y z (radians), translations in x y z (mm)
The *.mat file is a matrix which can be read by flirt for moving the image
into the "image" space. I think, by default, it simply picks the image in
the middle of the time series as the "image" space. But either way, it's
not a matlab matrix file.
Hope this helps.
Joe
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Joseph T. Devlin, Ph. D.
FMRIB Centre, Dept. of Clinical Neurology
University of Oxford
John Radcliffe Hospital
Headley Way, Headington
Oxford OX3 9DU
Phone: 01865 222 738
Email: [log in to unmask]
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