hi all - I'm trying to motion-correct fMRI data collected over multiple
runs, and it's not clear how to do this with mcflirt at the command
line. Obviously I could do this using some combination of avwmerge and
avwsplit but that seems rather awkward, particularly because I would
have to reconstruct the numbering within the individual runs after
avwsplitting the merged motion corrected image. Any suggestions would
be greatly appreciated.
cheers
russ
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