Dear FSL expert and Christian Beckmann,
The following are melodic.log and report.log. I can see the result but
the 00index.html is no function. Besides, the console didn't show
"finish" when I can see the result in the .ica file.
Melodic.log

Melodic Version 2.0 beta

/home/tulu/fsl/bin/melodic -i filtered_func_data -o
/home/tulu/TEST/xnx.ica -v --nobet --bgthreshold=10 --tr=3.0 -d 0
--mmthresh=0.5 --report --Ostats
---------------------------------------------

Melodic results will be in /home/tulu/TEST/xnx.ica

Reading data file filtered_func_data  ...  done
Create mask ... done
Excluding voxels with constant value
Data size : 50 x 406851
Removing mean image ... done
Estimating data covariance ... done
Perform variance-normalisation ... done
Removing mean time course ... done
Starting PCA  ... done
Estimating the number of sources from the data (PPCA) ...
  Calling Smoothest: /home/tulu/fsl/bin/smoothest -d 50 -r
filtered_func_data -m /home/tulu/TEST/xnx.ica/mask >
/home/tulu/TEST/xnx.ica/smoothest
Start whitening using  6 dimensions ...
  retaining 40.8863 percent of the variability
 ... done

Starting ICA estimation using symm

  Step no. 1 change : 0.882778
  Step no. 2 change : 0.795288
  Step no. 3 change : 0.81795
  Step no. 4 change : 0.871594
  Step no. 5 change : 0.372949
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  Step no. 7 change : 0.214705
  Step no. 8 change : 0.506175
  Step no. 9 change : 0.912572
  Step no. 10 change : 0.116408
  Step no. 11 change : 0.0803865
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  Step no. 15 change : 0.901241
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  Step no. 46 change : 0.0134716
  Step no. 47 change : 0.0132205
  Step no. 48 change : 0.0252373
  Step no. 49 change : 0.0567959
  Step no. 50 change : 0.163878
  Step no. 51 change : 0.378325
  Step no. 52 change : 0.861876
  Step no. 53 change : 0.989962
  Step no. 54 change : 0.229353
  Step no. 55 change : 0.292372
  Step no. 56 change : 0.584815
  Step no. 57 change : 0.879325
  Step no. 58 change : 0.0712915
  Step no. 59 change : 0.0949321
  Step no. 60 change : 0.207175
  Step no. 61 change : 0.406287
  Step no. 62 change : 0.712126
  Step no. 63 change : 0.637178
  Step no. 64 change : 0.33515
  Step no. 65 change : 0.678854
  Step no. 66 change : 0.492451
  Step no. 67 change : 0.788931
  Step no. 68 change : 0.294502
  Step no. 69 change : 0.732219
  Step no. 70 change : 0.657456
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  Step no. 72 change : 0.185144
  Step no. 73 change : 0.437729
  Step no. 74 change : 0.997739
  Step no. 75 change : 0.153969
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  Step no. 78 change : 0.929882
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  Step no. 91 change : 0.446554
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  Step no. 97 change : 0.365985
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  Step no. 99 change : 0.660341
  Step no. 100 change : 0.451218
  Step no. 101 change : 0.996268
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  Step no. 116 change : 0.733224
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  Step no. 120 change : 0.99243
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  Step no. 128 change : 0.254278
  Step no. 129 change : 0.936084
  Step no. 130 change : 0.209125
  Step no. 131 change : 0.245017
  Step no. 132 change : 0.339683
  Step no. 133 change : 0.688547
  Step no. 134 change : 0.706988
  Step no. 135 change : 0.19855
  Step no. 136 change : 0.196327
  Step no. 137 change : 0.209534
  Step no. 138 change : 0.380784
  Step no. 139 change : 0.793212
  Step no. 140 change : 0.676372
  Step no. 141 change : 0.540661
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  Step no. 144 change : 0.755544
  Step no. 145 change : 0.160425
  Step no. 146 change : 0.256619
  Step no. 147 change : 0.608466
  Step no. 148 change : 0.898943
  Step no. 149 change : 0.117638
  Step no. 150 change : 0.35202
  Step no. 151 change : 0.975283
  Step no. 152 change : 0.0945643
  Step no. 153 change : 0.145913
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  Step no. 161 change : 0.0908312
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  Step no. 164 change : 0.701415
  Step no. 165 change : 0.889407
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  Step no. 167 change : 0.338462
  Step no. 168 change : 0.986402
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  Step no. 170 change : 0.0509691
  Step no. 171 change : 0.0326041
  Step no. 172 change : 0.0307809
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  Step no. 174 change : 0.0398088
  Step no. 175 change : 0.0534132
  Step no. 176 change : 0.0811957
  Step no. 177 change : 0.112949
  Step no. 178 change : 0.176606
  Step no. 179 change : 0.252027
  Step no. 180 change : 0.405994
  Step no. 181 change : 0.604559
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  Step no. 183 change : 0.675642
  Step no. 184 change : 0.803064
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  Step no. 203 change : 0.632851
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  Step no. 209 change : 0.340059
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  Step no. 212 change : 0.611525
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  Step no. 223 change : 0.912181
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  Step no. 227 change : 0.0593598
  Step no. 228 change : 0.0806576
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  Step no. 237 change : 0.508664
  Step no. 238 change : 0.915449
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  Step no. 246 change : 0.993382
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  Step no. 253 change : 0.279533
  Step no. 254 change : 0.629158
  Step no. 255 change : 0.864012
  Step no. 256 change : 0.0940818
  Step no. 257 change : 0.220283
  Step no. 258 change : 0.645443
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  Step no. 260 change : 0.801154
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  Step no. 262 change : 0.667847
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  Step no. 356 change : 0.448
  Step no. 357 change : 0.802786
  Step no. 358 change : 0.0593989
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  Step no. 496 change : 0.967581
  Step no. 497 change : 0.0935518
  Step no. 498 change : 0.0693095
  Step no. 499 change : 0.296258

Restarting MELODIC using -d 9

Starting PCA  ... done
Start whitening using  9 dimensions ...
  retaining 50.0853 percent of the variability
 ... done

Starting ICA estimation using symm

  Step no. 1 change : 0.979455
  Step no. 2 change : 0.722152
  Step no. 3 change : 0.945463
  Step no. 4 change : 0.808682
  Step no. 5 change : 0.574701
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  Step no. 8 change : 0.324653
  Step no. 9 change : 0.660091
  Step no. 10 change : 0.690118
  Step no. 11 change : 0.164494
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  Step no. 29 change : 0.633573
  Step no. 30 change : 0.135606
  Step no. 31 change : 0.0500708
  Step no. 32 change : 0.052351
  Step no. 33 change : 0.0809958
  Step no. 34 change : 0.131846
  Step no. 35 change : 0.216438
  Step no. 36 change : 0.30952
  Step no. 37 change : 0.430573
  Step no. 38 change : 0.540978
  Step no. 39 change : 0.681716
  Step no. 40 change : 0.822758
  Step no. 41 change : 0.983985
  Step no. 42 change : 0.958433
  Step no. 43 change : 0.484864
  Step no. 44 change : 0.105081
  Step no. 45 change : 0.0812146
  Step no. 46 change : 0.101977
  Step no. 47 change : 0.1412
  Step no. 48 change : 0.173188
  Step no. 49 change : 0.205771
  Step no. 50 change : 0.205985
  Step no. 51 change : 0.211599
  Step no. 52 change : 0.18584
  Step no. 53 change : 0.172097
  Step no. 54 change : 0.140014
  Step no. 55 change : 0.120278
  Step no. 56 change : 0.0934923
  Step no. 57 change : 0.0762947
  Step no. 58 change : 0.0576906
  Step no. 59 change : 0.0456382
  Step no. 60 change : 0.0339836
  Step no. 61 change : 0.0264568
  Step no. 62 change : 0.0195739
  Step no. 63 change : 0.015145
  Step no. 64 change : 0.0112027
  Step no. 65 change : 0.00866537
  Step no. 66 change : 0.00643419
  Step no. 67 change : 0.00499128
  Step no. 68 change : 0.00372851
  Step no. 69 change : 0.00290506
  Step no. 70 change : 0.0021853
  Step no. 71 change : 0.00171096
  Step no. 72 change : 0.00129626
  Step no. 73 change : 0.00101976
  Step no. 74 change : 0.000777877
  Step no. 75 change : 0.000614659
  Step no. 76 change : 0.000471828
  Step no. 77 change : 0.000374298
  Step no. 78 change : 0.000288967
  Step no. 79 change : 0.000230474
  Step no. 80 change : 0.000187096
  Step no. 81 change : 0.000153392
  Step no. 82 change : 0.000124419
  Step no. 83 change : 0.000102007
  Step no. 84 change : 8.27163e-05
  Step no. 85 change : 6.78227e-05
  Step no. 86 change : 5.50041e-05
  Step no. 87 change : 4.51085e-05
  Convergence after 87 steps

Writing results to :
  /home/tulu/TEST/xnx.ica/melodic_IC
  /home/tulu/TEST/xnx.ica/melodic_mix
  /home/tulu/TEST/xnx.ica/melodic_FTmix
  /home/tulu/TEST/xnx.ica/mask

Running Mixture Modelling on Z-transformed IC maps ...
  IC map 1 ...
   thresholding ...
   alternative hypothesis test at p > 0.5
   creating report page ...    done
  IC map 2 ...
   thresholding ...
   alternative hypothesis test at p > 0.5
   creating report page ...    done
  IC map 3 ...
   thresholding ...
   alternative hypothesis test at p > 0.5
   creating report page ...    done
  IC map 4 ...
   thresholding ...
   alternative hypothesis test at p > 0.5
   creating report page ...    done
  IC map 5 ...
   thresholding ...
   alternative hypothesis test at p > 0.5
   creating report page ...    done
  IC map 6 ...
   thresholding ...
   alternative hypothesis test at p > 0.5
   creating report page ...    done
  IC map 7 ...
   thresholding ...
   alternative hypothesis test at p > 0.5
   creating report page ...    done
  IC map 8 ...
   thresholding ...
   alternative hypothesis test at p > 0.5
   creating report page ...    done
  IC map 9 ...

Report.log
/home/tulu/fsl/bin/avwroi /home/tulu/TEST/xnx example_func 25 1

/home/tulu/fsl/bin/mcflirt -in /home/tulu/TEST/xnx -out
prefiltered_func_data_mcf -refvol 25

/home/tulu/fsl/bin/betfunc prefiltered_func_data_mcf
prefiltered_func_data_bet

/home/tulu/fsl/bin/ip prefiltered_func_data_bet filtered_func_data 10 -s
3.39702760085 -t 16.6666666667 -1
THRESHOLD 12.902400
rm -rf prefiltered_func_data*

/home/tulu/fsl/bin/melodic -i filtered_func_data -o
/home/tulu/TEST/xnx.ica -v --nobet --bgthreshold=10 --tr=3.0 -d 0
--mmthresh="0.5" --report --Ostats
Thank for your help.
JLH

-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On
Behalf Of Christian Beckmann
Sent: Saturday, October 12, 2002 1:35 AM
To: [log in to unmask]
Subject: Re: [FSL] MELDIC problem

Hi

can you plese provide the report.log and melodic.log files from the .ica
folder - they should give some indication of what went wrong. You can
also try running it from the command line

melodic -i filename -v --report

cheers
Christian

Jung Lung Hsu wrote:
> Dear FSL expert,
> I just use the MELDIC from the new version of FSL (FSL v3.0). I input
the
> 4d analyze image which includes 50 subjects. The image diamension of
each
> subject is 79*95*68. After I click the go button I wait for about more
> than 6 hours but the Konsole did not show "finish" word. Besides, the
exit
> button did not function at that time. I use the P4 and 512 RAM, redhat
> 7.3. The report also have the problem. The 00index.html only have
> the "Component" word and no other number follows. Is any one can tell
me
> what is wrong ? How to correct it ? ( I pass the test of example data)
> Thanks
> JLH
>
>


--
  Christian F. Beckmann
  Address: Oxford University Centre for Functional
           Magnetic Resonance Imaging of the Brain,
           John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
  Email:   [log in to unmask]  http://www.fmrib.ox.ac.uk/~beckmann/
  Phone:   +44(0)1865 222782 Fax: +44(0)1865 222717 Mob: +44(0)7811
189123