> I work in Department of Neurology of Medical University of Lodz, Poland.
> We have just purchased Matlab and we are trying to get familiar with SPM. I
> know, that I should rather join SPM mailing list first, and I'm going to do
> that in a minute, but i am forced to write directly to you by my colleague,
> who is considering possible purchase of additional software, which could
> maybe be helpful in solving our problems, and she has very little time to
> place possible order.
> The problem is that when we try to process data acquired from our patients,
> we find that after the processing images are displayed upside down and they
> are not usable.
> We run SPM on Sun Ultra 10 machine, with Matlab 6, and we use JavaImage by
> Mark Horsfield to convert images from DICOM to Analyze format.
> We can't state by now if there is any problem in conversion algorithm,
> because we use only Jim as a viewer. I also posted Mark Horsfield in this
> regard.
The first thing you need to do is to reorient your images as described
in the following emails to the mailing list (some may be more helpful
than others):
http://www.jiscmail.ac.uk/cgi-bin/wa.exe?A2=ind9910&L=spm&P=R1689
http://www.jiscmail.ac.uk/cgi-bin/wa.exe?A2=ind0007&L=spm&P=R15606
http://www.jiscmail.ac.uk/cgi-bin/wa.exe?A2=ind0104&L=spm&P=R51878
http://www.jiscmail.ac.uk/cgi-bin/wa.exe?A2=ind0110&L=spm&P=R34392
Things should then work rather better after this.
Best regards,
-John
--
Dr John Ashburner.
Functional Imaging Lab., 12 Queen Square, London WC1N 3BG, UK.
tel: +44 (0)20 78337491 or +44 (0)20 78373611 x4381
fax: +44 (0)20 78131420 http://www.fil.ion.ucl.ac.uk/~john
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