Hi Dianne
We change the orientation of our sagital images using MRIcro. After loading
the volume into MRIcro, go to "Save as... [rotate/clip...]" and select the
Sagital -right or -left Format option. Use "Preview" to check the new
orientation, and then "Save ...". Be careful with you left and right.
Regards,
-Paul
>Dear All,
>I have been using SPM and MRIcro for a few months now...but I am
encountering
>a problem which I am hoping someone can help with:
>Our 3d anatomical images are in sagittal orientation...this means they are
>a mess when displayed in spm...which thinks the sagittal is the axial etc.
>etc. In spm, we have changed pitch by 90 degrees and roll by 90 degrees
>and then doing a flip in resize (x)...and thus we seem to have gotten the
>image into the correct orientation.
>
>Alas, these changes are recorded in a mat file which other programs (like
>MRIcro and mrGray) do not read. Does anyone know of any way to make the
>changes directly to the images, rather than recording them in the mat file?
>
>Alas, I am no matlab programmer.
>
>Thanks in advance,
>
>Dianne Patterson, Ph.D.
>[log in to unmask]
>CNL
>University of Arizona
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