Hello all,
I have just downloaded FSL and have started playing around with it. Looks
great!
I have written a converter from GE format to spm format, not quite AVW
because I'm using the spm functions to create the images, headers and mat
files. I'd like to use the information in the .mat files because it relates
voxel coordinate in the image to location in the scanner coordinate system.
ie I can acquire a small field of view oblique scan over visual cortex and
it will be very well registered to a full head anatomical scan from the same
session. It will be in register as far as the scanner is concerned, ie
distortions and subject movement are obviously not taken into account.
How can I use this information in FSL? Any suggestions would be greatly
appreciated.
Thanks,
Souheil
|