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First of all - thank you for working on the OS X version of fsl. This is
going to be very helpful!!
I thought you might be interested in the results of the test. I ran it twice
today and first time it stopped during Sinena because it could not find
a file. I soon found out the error, downloaded feeds again and rerun
the test on the clean download... but it did not finish again - this time
because it could not find a dynamic library for the 'convert' (line 227 of
the run script). I did not have time to work on it but my first thought that
I might need to work with convert that I have compiled originally (when
I started working on this...) But here are the numbers of the various
tests up to and including siena (note that some have failed). One
question: how do you determine the criteria for failure? Thanks!!!
[localhost:~/Desktop/feeds] zrinka% time RUN
FSL Evaluation and Example Data Suite v1.3
start time = Mon Nov 19 15:21:39 PST 2001
hostname = localhost
os = Darwin localhost 1.4 Darwin Kernel Version 1.4: Sun Sep 9
15:39:59 PDT 2001; root:xnu/xnu-201.obj~1/RELEASE_PPC Power
Macintosh powerpc
Starting BET at Mon Nov 19 15:21:39 PST 2001
/Users/zrinka/Desktop/fsl.1/bin/bet /Users/zrinka/Desktop/feeds/data/
structural /Users/zrinka/Desktop/feeds/results/structural_brain
% error = 0.0
Starting SUSAN at Mon Nov 19 15:22:57 PST 2001
/Users/zrinka/Desktop/fsl.1/bin/susan_smooth /Users/zrinka/Desktop/
feeds/data/structural 2000 /Users/zrinka/Desktop/feeds/results/
structural_susan 2 3 1 0
% error = 0.0
Starting FAST at Mon Nov 19 15:35:12 PST 2001
/Users/zrinka/Desktop/fsl.1/bin/fast -od /Users/zrinka/Desktop/feeds/
results/structural_brain -ob -or -e -ov /Users/zrinka/Desktop/feeds/
data/structural_brain
checking error on single-image binary segmentation:
% error = 0.117969254973
checking error on bias field:
% error = 0.0
checking error on restored image:
% error = 0.0038008100318
checking error on partial volume images:
% error = 1.11674923133
Warning - test failed!
% error = 0.837161326879
% error = 0.806071754563
Starting FLIRT at Mon Nov 19 16:28:47 PST 2001
/Users/zrinka/Desktop/fsl.1/bin/flirt -ref /Users/zrinka/Desktop/fsl.1/etc/
standard/avg152T1_brain -in /Users/zrinka/Desktop/feeds/data/
structural_brain -out /Users/zrinka/Desktop/feeds/results/
structural_brain2standard -omat /Users/zrinka/Desktop/feeds/results/
structural_brain2standard.mat -interp sinc
% error = 0.00367959574537
Starting PRELUDE & FUGUE at Mon Nov 19 16:40:04 PST 2001
/Users/zrinka/Desktop/fsl.1/bin/prelude -c /Users/zrinka/Desktop/
feeds/data/fieldmap -u /Users/zrinka/Desktop/feeds/results/
unwrapped_phase
% error = 0.0
/Users/zrinka/Desktop/fsl.1/bin/fugue -i /Users/zrinka/Desktop/feeds/
data/epi -p /Users/zrinka/Desktop/feeds/results/unwrapped_phase -d
0.295 -u /Users/zrinka/Desktop/feeds/results/unwarped_epi
% error = 0.0
Starting SIENAX at Mon Nov 19 16:40:14 PST 2001
/Users/zrinka/Desktop/fsl.1/bin/sienax /Users/zrinka/Desktop/feeds/
results/structural -d
% error = 3.63087577937
Warning - test failed!
dyld: /Users/zrinka/Desktop/fsl.1/bin/convertb can't open library: /sw/
lib/libtiff.3.dylib (No such file or directory, errno = 2)
while executing
"exec sh -c "${FSLDIR}/bin/convert ${DESIGN}.ppm ${DESIGN}.gif""
(file "RUN" line 227)
4528.480u 218.620s 2:23:06.17 55.2% 0+0k 169+542io 0pf+0w
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