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Subject:

Re: Problems using Render Display option

From:

John Ashburner <[log in to unmask]>

Reply-To:

John Ashburner <[log in to unmask]>

Date:

Tue, 14 Mar 2000 11:40:09 +0000 (GMT)

Content-Type:

TEXT/plain

Parts/Attachments:

Parts/Attachments

TEXT/plain (93 lines)

"load and resave in Matlab 5.3" means that the contents of each
render_*.mat were loaded into Matlab 5.3, and saved back into
a new render_*.mat.

There was a glitch on some systems that meant that Matlab had problems
loading the render_*.mat files. You can test to see if this is the
problem that you were experiencing by typing:
rendfile = 'D:\spm99\rend\render_smooth_average.mat';
load(rendfile)

and also:
dir D:\spm99\rend\render_smooth_average.mat
to see if the file actually exists. If it does not actually load the
file, then I don't really have any good suggestions, except possibly
checking the file permissions to see if it is readable.

All the best,
-John

| We copied the render_*.mat files from FIL website to SPM99/rend folder and
| deleted the old ones. After this we tried to get results, but the same error
| message below
| remained. We also tried Matthew Brett's files, but we didn't succeed to open
| them.
|
| There is still a loading error. Did we go somewhere wrong?
| Or is this problem more complicated?
| What does that load and resave in Matlab 5.3 actually mean?
| We are using SPM99 and Matlab 5.3.
|
| Thanks,
| Esa
|
| > I think this may be a Matlab glitch that Matthew Brett found a fix for,
| > that I copied to our patches and fixes directory:
| > ftp://ftp.fil.ion.ucl.ac.uk/spm/spm99_updates/renders.tar.gz
| >
| > ________________________________________________________________________
| > renders.tar.gz
| > ------------------------------------------------------------------------
| > The renders problem reported by James Patterson on the list may be the
| > same as that for SPM99b, and merely needs the render matrices loaded and
| > resaved in matlab 5.3. The new render_*.mat files were created by
| > Matthew Brett, and obtained from:
| > http://www.mrc-cbu.cam.ac.uk/~matthew.brett/ftp/Win_spm99/renders.tgz
| > -JA
| > ________________________________________________________________________
| >
| > Best wishes,
| > -John
| >
| >
| > | We have problems using Render Display option.Our aim is to get a proper
| > | brain image
| > | from a contrast image. First we chose number of sets :1 set and then
| > | selected SPM.mat and a contrast of our interest and estimated it. No
| matter
| > | which render file render*.mat and style and brighten blobs option we
| use, we
| > | get the following error message:
| > |
| > | SPM99: spm_render (v2.16) 17:57:52 - 13/03/2000
| > | ========================================================================
| > |
| > | SPM99: spm_getspm (v2.35) 17:57:54 - 13/03/2000
| > | ----------------------------------------------------------------
| > | SPM computation : ...initialising
| > | ...computing ...done
| > | contrast structure : ...saved to xCon.mat
| > | ??? Error using ==> load
| > | Can't read file.
| > |
| > | Error in ==> D:\spm99\spm_render.m
| > | On line 78 ==> load(rendfile);
| > |
| > | Error in ==> D:\spm99\spm.m
| > | On line 1180 ==> evalin('base',CBs{v-1})
| > |
| > | ??? Error while evaluating uicontrol Callback.
| > |
| > | Does anybody know how to fix this?
| > | Thanks in advance!
| > |
| > | Esa Wallius
| > | University of Turku, Finland
| > |
|
|



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