Hi,
If you are using FSL 4.1.2 then you will not get these outputs.
Also, there were several major improvements in the FIRST
statistics and models so you should update to the newest
version of FSL and try running FIRST after that. I think you'll
find that this will give you the desired outputs.
All the best,
Mark
On 18 Aug 2009, at 17:40, diagnostico imagenes wrote:
>
> Thanks Tom
>
>
> I do not get namefile_all_fast_firstseg.nii.gz
>
> I do not get the volume of the hippocampus
> again perform the steps,
> step 1:
>
> run_first_all image.nii.gz 4 output
> (
> I use the number 4 in boundary_threshold that in this instance for
> example , but this has something to do with
> http://www.fmrib.ox.ac.uk/fsl/first/cma_subcortical_label.html
> )
>
> step 2:
> output...:
>
> output_L_Accu.vtk
> output_L_Amyg.vtk
> output_L_Hip.vtk
> ..
> (but all archives extension = .vtk & .bvars
> and a single file nii.gz)
>
>
>
> output_to_std.nii.gz
>
> what is the error?
>
> Thank you very much for your time,
> Yours sincerely, Nico
>
> FSL 4.1.2
>
> ¡Creá carpetas para todos tus correos! ¡Espacio ILIMITADO con el
> nuevo Hotmail!
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