Hi,
This is a very strange looking error - I suspect either that there is
something wrong with your computer or file system mounting, or it is a
weird operating system that we've not seen before. Exactly what
hardware and OS are you running, and which version of FSL? Have you
tried rebooting your computer?
Cheers.
On 4 Aug 2009, at 08:10, judith wrote:
> Hi,
>
> I am having troubles performing a high level analysis using low
> level feat
> directories.
> For low level processing I was not experiencing any trouble.
> However, using
> these low level feat directories in a high level analysis, for
> example a simple
> average of one group using mixed effects or fixed effects, the high
> level stats
> crashes at the following command:
> /apps/fsl/current/bin/flameo --cope=filtered_func_data --
> vc=var_filtered_func_data --dvc=tdof_filtered_func_data --mask=mask --
> ld=stats --dm=design.mat --cs=design.grp --tc=design.con --runmode=fe
> Warning: no access to tty (Bad file descriptor).
> Using this command by entering it in the terminal, it runs without
> any problems
> the stats, so the data needed are available.
> However since poststats cannot be ran seperatly, I cannot perform the
> analysis needed.
> Does anyone have an idea wat I am doing wrong?
>
> I will add the whole command line below:
> Higher-level stats
>
> cat ../design.lcon | awk '{ print }' > design.lcon
> /apps/fsl/current/bin/flameo --cope=filtered_func_data --
> vc=var_filtered_func_data --dvc=tdof_filtered_func_data --mask=mask --
> ld=stats --dm=design.mat --cs=design.grp --tc=design.con --runmode=fe
> Warning: no access to tty (Bad file descriptor).
> Thus no job control in this shell.
> dummy: Command not found.
> Warning: no access to tty (Bad file descriptor).
> Thus no job control in this shell.
>
> /bin/rm -f stats/zem* stats/zols* stats/mask* ; /bin/mv dof stats
> Warning: no access to tty (Bad file descriptor).
> Thus no job control in this shell.
>
> Post-stats
>
> couldn't change working directory
> to "/mic/jvhoev2/data_taal/data/CO/FE_single_group_average.gfeat/
> cope1.feat
> /stats": no such file or directory
> while executing
> "cd ${FD}/stats"
> (procedure "feat5:proc_poststats" line 50)
>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
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