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July 2019

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Subject	From	Date	Size
Re: Questions about Exporting particle file from cryosparc to star file	Daniel Asarnow	Sun, 30 Jun 2019 17:11:37 -0700	168 lines
FW: Current situation -- CSHA meeting on Cross-Scale Biological Structure: From Macromolecular Complexes and Organelles to Cells and Tissues (September 2-6, 2019)	<>	Mon, 1 Jul 2019 17:52:31 +0100	16029 lines
Reminder: Cryo-EM position in MRC-LMB Cambridge	Shaoxia Chen	Tue, 2 Jul 2019 12:47:15 +0100	174 lines
EMPIAR and the EMBL-EBI BioImage Archive	Osman Salih	Tue, 2 Jul 2019 14:45:04 +0100	263 lines
Impose D2 symmetry for a non-polar filament refinement	Yangqi Gu	Tue, 2 Jul 2019 16:45:11 +0100	22 lines
Re: Impose D2 symmetry for a non-polar filament refinement	Alexis Rohou	Tue, 2 Jul 2019 09:31:07 -0700	3294 lines
Re: Impose D2 symmetry for a non-polar filament refinement	BuddySphinx	Tue, 2 Jul 2019 14:49:08 -0400	3190 lines
Re: problem running MPI on all threads	Joel Meyerson	Tue, 2 Jul 2019 22:41:27 +0000	114 lines
Re: problem running MPI on all threads	Takanori Nakane	Tue, 2 Jul 2019 23:48:10 +0100	107 lines
Half Map Reconstruction in Relion without Alignment	Colin Deniston	Wed, 3 Jul 2019 00:31:07 +0100	32 lines
Re: Half Map Reconstruction in Relion without Alignment	Craig Yoshioka	Tue, 2 Jul 2019 23:43:09 +0000	43 lines
Re: problem running MPI on all threads	Joshua Lobo	Wed, 3 Jul 2019 12:01:02 +0100	305 lines
Re: problem running MPI on all threads	Jason Key	Wed, 3 Jul 2019 10:01:31 -0400	98 lines
CSHA meeting on Cross-Scale Biological Structure: From Macromolecular Complexes and Organelles to Cells and Tissues (September 2-6, 2019)	<>	Wed, 3 Jul 2019 16:45:48 +0100	16069 lines
Problem with 3D Classification in helix processing	DAVID GIL CANTERO	Fri, 5 Jul 2019 15:12:08 +0200	37 lines
Multiple center points for local search in relion 3D classification/refine?	Chen Zhao	Mon, 8 Jul 2019 01:15:38 -0400	82 lines
Re: Multiple center points for local search in relion 3D classification/refine?	Juha Huiskonen	Mon, 8 Jul 2019 11:07:39 +0300	145 lines
Re: Multiple center points for local search in relion 3D classification/refine?	Sjors Scheres	Mon, 8 Jul 2019 09:09:07 +0100	69 lines
Re: Multiple center points for local search in relion 3D classification/refine?	Chen Zhao	Mon, 8 Jul 2019 10:16:57 -0400	177 lines
2D classification model.star file display error	Tian. Li	Mon, 8 Jul 2019 20:58:16 +0100	40 lines
Re: 2D classification model.star file display error	Paul Emsley	Mon, 8 Jul 2019 21:11:02 +0100	44 lines
Postdoctoral Position at NNF-CPR University of Copenhagen	Guillermo Montoya	Mon, 8 Jul 2019 21:09:32 +0000	190 lines
EM core/facility staff Slack group	Rebecca Thompson	Tue, 9 Jul 2019 11:15:46 +0000	170 lines
Re: problem running MPI on all threads	Schenk, Andreas Daniel	Tue, 9 Jul 2019 13:07:05 +0000	835 lines
Superposition of cryo-EM maps	John Lee	Tue, 9 Jul 2019 17:23:17 +0100	27 lines
Fwd: [ccpem] Superposition of cryo-EM maps	Daniel Asarnow	Tue, 9 Jul 2019 09:30:17 -0700	85 lines
Re: Superposition of cryo-EM maps	Daniel Asarnow	Tue, 9 Jul 2019 09:34:13 -0700	84 lines
Re: Superposition of cryo-EM maps	David Michael Belnap	Tue, 9 Jul 2019 19:51:57 +0000	167 lines
Re: Superposition of cryo-EM maps	Reza Khayat	Tue, 9 Jul 2019 19:55:27 +0000	262 lines
Postdoc on CryoEM of ion channels	Christos Pliotas	Wed, 10 Jul 2019 18:10:01 +0000	349 lines
Resolution difference between 3D refine and 3D classification	Vidya Mangala Prasad	Wed, 10 Jul 2019 23:00:49 +0100	46 lines
Re: Resolution difference between 3D refine and 3D classification	Takanori Nakane	Wed, 10 Jul 2019 23:39:38 +0100	45 lines
something wrong with result from Refine3D after 3D classification	KZ	Wed, 10 Jul 2019 15:45:13 -0700	43 lines
Re: Resolution difference between 3D refine and 3D classification	Vidya Mangala Prasad	Wed, 10 Jul 2019 23:59:46 +0100	55 lines
Re: Resolution difference between 3D refine and 3D classification	Takanori Nakane	Thu, 11 Jul 2019 12:12:14 +0100	47 lines
Re: something wrong with result from Refine3D after 3D classification	Takanori Nakane	Thu, 11 Jul 2019 12:23:47 +0100	31 lines
Re: something wrong with result from Refine3D after 3D classification	KZ	Thu, 11 Jul 2019 04:35:12 -0700	46 lines
eBIC Cryo-EM Sample prep course 2019	[log in to unmask]	Thu, 11 Jul 2019 12:08:49 +0000	233 lines
Re: something wrong with result from Refine3D after 3D classification	Takanori Nakane	Thu, 11 Jul 2019 14:05:09 +0100	51 lines
Re: Resolution difference between 3D refine and 3D classification	Dimitry Tegunov	Thu, 11 Jul 2019 15:24:46 +0200	97 lines
Request	ROMANY ABSKHARON	Thu, 11 Jul 2019 14:08:00 -0700	43 lines
Re: Request	Takanori Nakane	Thu, 11 Jul 2019 22:19:52 +0100	48 lines
3D classification	Eric Hanssen	Fri, 12 Jul 2019 00:23:31 +0000	1468 lines
Re: 3D classification	Dmitry Lyumkis	Fri, 12 Jul 2019 00:38:38 +0000	331 lines
Where to find LibG.?	khaja faisal tarique	Fri, 12 Jul 2019 10:12:18 +0530	65 lines
Re: Where to find LibG.?	Benda, Christian	Fri, 12 Jul 2019 08:13:59 +0000	107 lines
Re: 3D classification	Sjors Scheres	Fri, 12 Jul 2019 10:37:14 +0100	93 lines
Re: 3D classification	Hugo Muñoz Hernández	Fri, 12 Jul 2019 09:50:25 +0000	360 lines
Re: 3D classification	Sayan Bhakta	Fri, 12 Jul 2019 15:52:16 +0530	1017 lines
Re: Where to find LibG.?	Tom Burnley - UKRI STFC	Fri, 12 Jul 2019 12:38:23 +0000	68 lines
Postdoctoral Positions at ICR London	Sebastian Guettler	Fri, 12 Jul 2019 13:19:29 +0000	304 lines
Relion error during 3D initial Model	dingjienv	Fri, 12 Jul 2019 22:55:17 +0800	5771 lines
Misaligned half-maps in icosahedral reconstruction	Tsybovsky, Yaroslav (NIH/NCI) [C]	Fri, 12 Jul 2019 15:50:08 +0000	3867 lines
Re: Misaligned half-maps in icosahedral reconstruction	Craig Yoshioka	Fri, 12 Jul 2019 15:58:13 +0000	145 lines
Re: Relion error during 3D initial Model	Takanori Nakane	Fri, 12 Jul 2019 17:00:26 +0100	44 lines
Re: [3dem] 3D classification	Ali Punjani	Fri, 12 Jul 2019 12:53:41 -0400	250 lines
change box size in particle subtraction and .mrcs unstacking	Yanyan Zhao	Fri, 12 Jul 2019 22:13:43 +0100	26 lines
Re: [3dem] 3D classification	Eric Hanssen	Fri, 12 Jul 2019 23:29:06 +0000	310 lines
Re: change box size in particle subtraction and .mrcs unstacking	Takanori Nakane	Sat, 13 Jul 2019 06:09:17 +0100	51 lines
Re: [3dem] 3D classification	Bruno KLAHOLZ	Sat, 13 Jul 2019 05:27:48 +0000	714 lines
Opportunity in the Gonen lab	Johan Hattne	Sat, 13 Jul 2019 11:08:47 -0700	42 lines
Bayesian Polishing & CTF Refinement of Focused Refined Structure	Huy Bui	Sat, 13 Jul 2019 14:27:30 -0400	56 lines
Re: Bayesian Polishing & CTF Refinement of Focused Refined Structure	Takanori Nakane	Sun, 14 Jul 2019 04:55:04 +0100	56 lines
"Magnified pixel size (Angstrom)" was passed to both "--DStep" and "--angpix"	Kailu Yang	Sun, 14 Jul 2019 13:23:04 -0700	2691 lines
Cryo-FIB/SEM & Cryo-ET Staff Scientist position in New York	Anthony Fitzpatrick	Sun, 14 Jul 2019 20:54:46 -0400	150 lines
Re: "Magnified pixel size (Angstrom)" was passed to both "--DStep" and "--angpix"	Takanori Nakane	Mon, 15 Jul 2019 08:04:56 +0100	48 lines
Team Leader posts at ICR	Laurence Pearl	Mon, 15 Jul 2019 08:19:58 +0000	70 lines
DockEM	khaja faisal tarique	Mon, 15 Jul 2019 14:51:16 +0530	168713 lines
Re: MTF for Falcon III	Robert Ford	Mon, 15 Jul 2019 11:49:01 +0000	131 lines
Postdoc in Pearl/Oliver lab at Genome Damage and Stability Centre, Sussex	Laurence Pearl	Mon, 15 Jul 2019 12:05:40 +0000	321 lines
10 month postdoc position	Morgan Beeby	Mon, 15 Jul 2019 15:59:09 +0100	53 lines
Post-doctoral Research Scientist in Structural Biology position	RFI Director	Tue, 16 Jul 2019 12:38:20 +0000	324 lines
Does Relion's prior contain information from 2D classes in 3D alignment?	Thomas Bausewein	Tue, 16 Jul 2019 16:12:53 +0200	33 lines
Constrained Single Particle Tomography in Relion	Tom Calcraft	Tue, 16 Jul 2019 15:49:06 +0000	45 lines
Re: Does Relion's prior contain information from 2D classes in 3D alignment?	Takanori Nakane	Tue, 16 Jul 2019 17:04:52 +0100	52 lines
Re: Constrained Single Particle Tomography in Relion	Takanori Nakane	Tue, 16 Jul 2019 17:12:38 +0100	85 lines
CryoEM Senior Software Scientist in eBIC, Diamond Light Source, UK	<>	Tue, 16 Jul 2019 20:45:56 +0100	203 lines
parallel strip densities in refined em map	Yu Qiu	Tue, 16 Jul 2019 22:20:25 +0000	10545 lines
Re: parallel strip densities in refined em map	Joaquin Ortega	Tue, 16 Jul 2019 18:31:51 -0400	164 lines
Re: parallel strip densities in refined em map	Szymon W Manka	Tue, 16 Jul 2019 23:44:57 +0100	10574 lines
Re: parallel strip densities in refined em map	Ahmad Khalifa	Tue, 16 Jul 2019 18:58:30 -0400	10608 lines
Re: parallel strip densities in refined em map	Takanori Nakane	Wed, 17 Jul 2019 10:50:14 +0100	53 lines
Re: Constrained Single Particle Tomography in Relion	Takanori Nakane	Wed, 17 Jul 2019 10:53:02 +0100	128 lines
Re: Constrained Single Particle Tomography in Relion	Bjoern Forsberg	Wed, 17 Jul 2019 12:59:51 +0200	243 lines
Re: Does Relion's prior contain information from 2D classes in 3D alignment?	Sjors Scheres	Wed, 17 Jul 2019 12:57:17 +0100	56 lines
Re: parallel strip densities in refined em map	Yu Qiu	Wed, 17 Jul 2019 13:14:05 +0000	355 lines
Re: helical reconstruction errors in Relion 3.0.6	Fitzpatrick, James	Wed, 17 Jul 2019 14:00:22 +0000	140 lines
Re: Constrained Single Particle Tomography in Relion	Tom Calcraft	Wed, 17 Jul 2019 14:00:37 +0000	266 lines
Re: helical reconstruction errors in Relion 3.0.6	Takanori Nakane	Wed, 17 Jul 2019 15:22:23 +0100	40 lines
Re: helical reconstruction errors in Relion 3.0.6	Takanori Nakane	Wed, 17 Jul 2019 15:46:00 +0100	52 lines
Understanding Biology through Structure, March 16-20, 2020 in Santa Fe,NM	Tom Terwilliger	Thu, 18 Jul 2019 10:11:36 -0600	116 lines
Postdoc Position at Rice University Houston	Yang Gao	Thu, 18 Jul 2019 21:37:40 +0100	40 lines
RTX 2080 Ti supports Nvidia 3D vision?	John Lee	Fri, 19 Jul 2019 04:40:28 +0100	28 lines
Re: RTX 2080 Ti supports Nvidia 3D vision?	Matthew Belousoff	Fri, 19 Jul 2019 13:56:08 +1000	136 lines
Re: RTX 2080 Ti supports Nvidia 3D vision?	Yehuda Halfon	Fri, 19 Jul 2019 04:19:38 +0000	235 lines
local refinement to global map reconstruction	Xiaodong Yan	Fri, 19 Jul 2019 06:25:30 +0100	28 lines
PSDI 2019 -- early bird closing: 22nd July	Judit Debreczeni	Fri, 19 Jul 2019 07:42:43 +0100	96 lines
Re: local refinement to global map reconstruction	Takanori Nakane	Fri, 19 Jul 2019 09:02:19 +0100	41 lines
Classification in relion	Shirin Akbar	Fri, 19 Jul 2019 14:32:11 +0530	56 lines
combining maps/masks for RELION multi body	Laurence Pearl	Fri, 19 Jul 2019 10:44:33 +0000	156 lines
Re: combining maps/masks for RELION multi body	Takanori Nakane	Fri, 19 Jul 2019 12:15:04 +0100	45 lines
Re: combining maps/masks for RELION multi body	Laurence Pearl	Fri, 19 Jul 2019 11:20:54 +0000	159 lines
Re: combining maps/masks for RELION multi body	Arka Chakraborty	Fri, 19 Jul 2019 12:35:22 +0100	266 lines
Re: local refinement to global map reconstruction	Xiaodong Yan	Fri, 19 Jul 2019 13:41:58 +0100	29 lines
Re: local refinement to global map reconstruction	Takanori Nakane	Fri, 19 Jul 2019 14:10:47 +0100	51 lines
Re: RTX 2080 Ti supports Nvidia 3D vision?	Jason Key	Fri, 19 Jul 2019 09:24:33 -0400	81 lines
Re: RTX 2080 Ti supports Nvidia 3D vision?	Clemens Grimm	Fri, 19 Jul 2019 15:30:18 +0200	146 lines
Re: combining maps/masks for RELION multi body	Laurence Pearl	Fri, 19 Jul 2019 14:06:31 +0000	345 lines
TIFF NOT FOUND during cmake	Darin Lory	Fri, 19 Jul 2019 11:17:14 -0400	216 lines
Re: TIFF NOT FOUND during cmake	Takanori Nakane	Fri, 19 Jul 2019 16:37:53 +0100	159 lines
NVIDIA driver/library mismatch	Yehuda Goldgur	Fri, 19 Jul 2019 16:48:05 +0100	27 lines
Re: local refinement to global map reconstruction	Xiaodong Yan	Fri, 19 Jul 2019 16:51:11 +0100	27 lines
Re: TIFF NOT FOUND during cmake	Darin Lory	Fri, 19 Jul 2019 14:22:22 -0400	385 lines
2D classification of amyloid fibrils (EMPIAR 10230)	Qiuye Li	Sun, 21 Jul 2019 18:18:09 +0100	33 lines
Re: 2D classification of amyloid fibrils (EMPIAR 10230)	Sjors Scheres	Sun, 21 Jul 2019 21:03:29 +0100	65 lines
Re: Classification in relion	Sjors Scheres	Sun, 21 Jul 2019 21:05:44 +0100	56 lines
Re: NVIDIA driver/library mismatch	Lugmayr, Wolfgang	Mon, 22 Jul 2019 11:40:40 +0200	47 lines
Re: 2D classification of amyloid fibrils (EMPIAR 10230)	Qiuye Li	Mon, 22 Jul 2019 16:32:21 -0400	169 lines
strange planes in Relion-3.0.6 refinement result after Polishing	qianhui qu	Mon, 22 Jul 2019 13:54:01 -0700	8586 lines
Re: strange planes in Relion-3.0.6 refinement result after Polishing	Takanori Nakane	Mon, 22 Jul 2019 22:44:15 +0100	53 lines
Re: strange planes in Relion-3.0.6 refinement result after Polishing	qianhui qu	Mon, 22 Jul 2019 23:24:27 -0700	65 lines
Re: strange planes in Relion-3.0.6 refinement result after Polishing	Takanori Nakane	Tue, 23 Jul 2019 07:54:44 +0100	72 lines
Re: strange planes in Relion-3.0.6 refinement result after Polishing	qianhui qu	Tue, 23 Jul 2019 00:03:47 -0700	331 lines
Re: strange planes in Relion-3.0.6 refinement result after Polishing	Takanori Nakane	Tue, 23 Jul 2019 08:08:57 +0100	147 lines
CCP-EM webinar today	Colin Palmer - UKRI STFC	Tue, 23 Jul 2019 14:39:25 +0000	140 lines
Re: strange planes in Relion-3.0.6 refinement result after Polishing	qianhui qu	Tue, 23 Jul 2019 12:12:23 -0700	354 lines
Weird particle distribution	Eric Hanssen	Tue, 23 Jul 2019 21:27:21 +0000	114250 lines
Postdoctoral positions - CryoEM/Infectious diseases	David Veesler	Wed, 24 Jul 2019 08:31:47 -0700	138 lines
bayesian polishing	jp d	Wed, 24 Jul 2019 23:49:11 +0000	35 lines
Re: bayesian polishing	Elad Binshtein	Wed, 24 Jul 2019 22:03:18 -0500	127 lines
Survey on EMBL-EBI's data resources (incl. PDBe, PDBe-KB, EMDB, EMPIAR, BioImage Archive)	Gerard Kleywegt	Thu, 25 Jul 2019 15:24:21 +0100	55 lines
System Administrator at UW-Madison	Eric J. Montemayor	Thu, 25 Jul 2019 17:30:22 +0000	254 lines
Re: problem running MPI on all threads	Joel Meyerson	Thu, 25 Jul 2019 17:34:55 +0000	84 lines
tif/tiff files processing	Marcin Jaciuk	Fri, 26 Jul 2019 13:36:39 +0200	117 lines
Re: tif/tiff files processing	Takanori Nakane	Fri, 26 Jul 2019 12:52:34 +0100	157 lines
Re: tif/tiff files processing	Takanori Nakane	Fri, 26 Jul 2019 13:43:36 +0100	210 lines
processing data with gold foil in images	Joel Meyerson	Fri, 26 Jul 2019 13:07:10 +0000	23 lines
CUDA driver version is insufficient for CUDA runtime version	Josue Gomez Blanco	Mon, 29 Jul 2019 12:02:34 -0400	361 lines
Re: CUDA driver version is insufficient for CUDA runtime version	Takanori Nakane	Mon, 29 Jul 2019 17:38:44 +0100	218 lines
Postdoctoral position in crystallographic methods and software development at Wuerzburg University, Germany	Andrea Thorn	Mon, 29 Jul 2019 19:12:38 +0200	61 lines
keeping the relion GUI open during long idle periods	Cody Brazel	Mon, 29 Jul 2019 21:16:49 +0100	50 lines
Re: [ccpem] keeping the relion GUI open during long idle periods	Matthew Franklin	Mon, 29 Jul 2019 20:51:42 +0000	79 lines
Re: keeping the relion GUI open during long idle periods	Alpay Burak Seven	Mon, 29 Jul 2019 18:06:18 -0700	127 lines
Postdoc in DNA Repair Structural Biology - GDSC Sussex	Laurence Pearl	Tue, 30 Jul 2019 08:07:56 +0000	80 lines
ISOLDE dev builds now available	Tristan Croll	Tue, 30 Jul 2019 11:54:11 +0100	44 lines
Re: [ccpem] keeping the relion GUI open during long idle periods	Sjors Scheres	Wed, 31 Jul 2019 07:29:19 +0100	46 lines
Random Conical Tilt Statistics	Cryo EM	Wed, 31 Jul 2019 12:16:22 +0530	39 lines
Conference in Rome on CryoElectron Microscopy in Structural Biology, 10-11 October 2019	Miele Adriana	Wed, 31 Jul 2019 11:47:03 +0100	48 lines
upfitting a workstation	Nathan Hudson	Wed, 31 Jul 2019 14:24:09 +0100	29 lines
Re: upfitting a workstation	Thejusvi Ganesh	Wed, 31 Jul 2019 06:53:44 -0700	155 lines
Career Opportunity - CryoEM Specialist at the St. Jude Children's Research Hospital	Tang, Liang	Wed, 31 Jul 2019 14:20:33 +0000	646 lines
Career Opportunity - IT Specialist in CryoEM at the St. Jude Children's Research Hospital	Tang, Liang	Wed, 31 Jul 2019 14:26:50 +0000	437 lines
"save selected classes" is greyed out	Ahmad Khalifa	Wed, 31 Jul 2019 10:38:05 -0400	39 lines
Re: "save selected classes" is greyed out	David Michael Belnap	Wed, 31 Jul 2019 14:42:21 +0000	67 lines

CCPEM Archives

July 2019

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