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February 2018


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Table of Contents:

2D Classification - Weird class distribution and class behaviour (9 messages)
2D classification fail (2 messages)
4 more days to apply. Postdoctoral Training Fellowship at the Francis Crick Institute - Costa lab (1 message)
Abstract submission deadline extended til March 1 2018 (1 message)
Bioimaging developer at EMBL-EBI (1 message)
CCP-EM Spring Symposium IV: 11-12th April 2018 - Registration closes this week (1 message)
CCP-EM Spring Symposium IV: 11-12th April 2018 Keele University (1 message)
command wrong while optimise parameters for auto-picking (2 messages)
CryoEM position at Heptares Therapeutics (1 message)
ctffind 4.1.10 (1 message)
CTFFIND very slow (5 messages)
deadline approaching: EMBO Practical Course on Characterization of macromolecular complexes by integrative structural biology (1 message)
Duplicated re-extracted particles - suggestion (7 messages)
EM Validation Developer Post (1 message)
error while running partile-sort after auto-pick by GUI (4 messages)
Faculty openings at University of Vienna: Professorship and 2 tenure track positions (1 message)
generate a map directly from a star file of subtomogram data (8 messages)
How to kill a Zombie RELION job (5 messages)
How to re-run a finished job (3 messages)
Job Advertisement (1 message)
LMB cryoEM course 2017 (1 message)
Local ctf estimation 'breaks' after several micrographs (5 messages)
Masked and unmasked FSC has ~1.8A difference at 0.143 cut off (4 messages)
Motioncor2-1.05 Dark Reference Warning with no Dark file input (2 messages)
MPI Biochemistry - Munich, Germany - cryoEM Facility Manager Position (1 message)
MTF in postprocessing (2 messages)
PhD Fellowship in cryo-EM at NNF-CPR, University of Copenhagen (1 message)
PhD in structural biology (1 message)
PhD Positions in Integrative Structural Biology in Vienna (1 message)
PhD studentship (1 message)
Post-doctoral position - University of Sheffield (1 message)
Postdoctoral scientist position in cryo-ET of host-virus interaction. (1 message)
relion 3D refine error (5 messages)
relion 3D refinement hits time wall limit (3 messages)
relion autopick outlier_removal_zscore (1 message)
Reminder: CCP-EM Spring Symposium IV: 11-12th April 2018 Keele University (1 message)
Rescaling method implemented in RELION (3 messages)
Research Assistant - University of Oxford - Peter McHugh Lab (1 message)
Research Problem: Intensity of each frame (1 message)
Research Problem: _rlncoordinateX and _rlncoordinateY (2 messages)
Research Problem:16 frames of example data set "betagal" (2 messages)
running relion with GUI on cluster (6 messages)
Simulating images (3 messages)
Software Engineer (Web Development) for ISPyB and SynchWeb at Diamond. (1 message)
space requirement for localrec files (1 message)
standard repeatable benchmark (2 messages)
To use, or not to use? That is my question about 2x Binned Data (3 messages)
unblur from relion (1 message)
unsubscribe (1 message)
Vacancy for scientific data curator (EMDB/EMPIAR) at EMBL-EBI (1 message)
Weird behaviour of Manual Picking (4 messages)
wrongs about "Making templates for auto-picking" in the "relion21_tutorial" ,section 3.6 (2 messages)
Young Independent Researcher Groups: a Postdoc-Programme for Innovative, Interdisciplinary Teams (1 message)
[ccpem] mont corr runn error with tutorial data (2 messages)
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Subject Sorted by Subject, Most Recent First

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Date

Size
New Thread

2D Classification - Weird class distribution and class behaviour

Re: 2D Classification - Weird class distribution and class behaviour

Sjors Scheres

Tue, 13 Feb 2018 09:26:25 +0000

43 lines

Re: 2D Classification - Weird class distribution and class behaviour

Amer Alam

Tue, 13 Feb 2018 08:32:38 +0000

21 lines

Re: 2D Classification - Weird class distribution and class behaviour

Dan Asarnow

Mon, 12 Feb 2018 14:06:50 -0800

242 lines

Re: 2D Classification - Weird class distribution and class behaviour

Dan Asarnow

Mon, 12 Feb 2018 14:02:58 -0800

700 lines

Re: 2D Classification - Weird class distribution and class behaviour

Sjors Scheres

Mon, 12 Feb 2018 20:51:45 -0000

75 lines

Re: 2D Classification - Weird class distribution and class behaviour

Matzov Donna

Mon, 12 Feb 2018 20:11:07 +0000

210 lines

Re: 2D Classification - Weird class distribution and class behaviour

Yehuda Halfon

Mon, 12 Feb 2018 19:57:36 +0000

132 lines

Re: 2D Classification - Weird class distribution and class behaviour

Dan Asarnow

Mon, 12 Feb 2018 11:56:13 -0800

161 lines

2D Classification - Weird class distribution and class behaviour

Yang Suo

Mon, 12 Feb 2018 19:37:29 +0000

116 lines
New Thread

2D classification fail

Re: 2D classification fail

Dari Kimanius

Wed, 7 Feb 2018 11:26:34 +0100

102 lines

2D classification fail

Tian. Li

Tue, 6 Feb 2018 14:09:28 +0000

36 lines
New Thread

4 more days to apply. Postdoctoral Training Fellowship at the Francis Crick Institute - Costa lab

4 more days to apply. Postdoctoral Training Fellowship at the Francis Crick Institute - Costa lab

Alessandro Costa

Thu, 22 Feb 2018 15:59:09 +0000

495 lines
New Thread

Abstract submission deadline extended til March 1 2018

Abstract submission deadline extended til March 1 2018

Zhang, Peijun

Tue, 20 Feb 2018 05:55:01 +0000

934 lines
New Thread

Bioimaging developer at EMBL-EBI

Bioimaging developer at EMBL-EBI

Ardan Patwardhan

Thu, 15 Feb 2018 17:46:49 +0000

87 lines
New Thread

CCP-EM Spring Symposium IV: 11-12th April 2018 - Registration closes this week

CCP-EM Spring Symposium IV: 11-12th April 2018 - Registration closes this week

Tom Burnley

Tue, 27 Feb 2018 14:46:59 +0000

341 lines
New Thread

CCP-EM Spring Symposium IV: 11-12th April 2018 Keele University

CCP-EM Spring Symposium IV: 11-12th April 2018 Keele University

Tom Burnley

Thu, 22 Feb 2018 11:04:37 +0000

334 lines
New Thread

command wrong while optimise parameters for auto-picking

Re: command wrong while optimise parameters for auto-picking

CuiKunlei

Fri, 9 Feb 2018 11:56:25 +0800

86 lines

command wrong while optimise parameters for auto-picking

CuiKunlei

Fri, 9 Feb 2018 11:54:03 +0800

64 lines
New Thread

CryoEM position at Heptares Therapeutics

CryoEM position at Heptares Therapeutics

Stacey Southall

Tue, 13 Feb 2018 15:49:03 +0000

31 lines
New Thread

ctffind 4.1.10

ctffind 4.1.10

Alexis Rohou

Thu, 8 Feb 2018 09:00:40 -0800

37 lines
New Thread

CTFFIND very slow

Re: CTFFIND very slow

Yehuda Halfon

Thu, 8 Feb 2018 17:44:11 +0000

75 lines

Re: CTFFIND very slow

Takanori Nakane

Thu, 8 Feb 2018 17:20:19 -0000

52 lines

Re: CTFFIND very slow

Gregory Sharov

Thu, 8 Feb 2018 16:48:38 +0000

109 lines

Re: CTFFIND very slow

Alexis Rohou

Thu, 8 Feb 2018 08:48:54 -0800

103 lines

CTFFIND very slow

Yehuda Halfon

Thu, 8 Feb 2018 16:20:56 +0000

55 lines
New Thread

deadline approaching: EMBO Practical Course on Characterization of macromolecular complexes by integrative structural biology

deadline approaching: EMBO Practical Course on Characterization of macromolecular complexes by integrative structural biology

Marco Marcia

Mon, 19 Feb 2018 14:36:15 +0100

61 lines
New Thread

Duplicated re-extracted particles - suggestion

Re: Duplicated re-extracted particles - suggestion

Carlos Oscar Sorzano

Sun, 18 Feb 2018 12:59:33 +0100

163 lines

Re: Duplicated re-extracted particles - suggestion

Axel Brilot

Fri, 16 Feb 2018 12:18:05 -0800

91 lines

Re: Duplicated re-extracted particles - suggestion

Sjors Scheres

Fri, 16 Feb 2018 17:55:36 +0000

153 lines

Re: Duplicated re-extracted particles - suggestion

Leonid Sazanov

Fri, 16 Feb 2018 18:22:40 +0100

284 lines

Re: Duplicated re-extracted particles - suggestion

Bjoern Forsberg

Fri, 16 Feb 2018 17:03:28 +0100

233 lines

Re: Duplicated re-extracted particles - suggestion

Yong Zi Tan

Fri, 16 Feb 2018 14:35:08 +0000

122 lines

Duplicated re-extracted particles - suggestion

Leonid Sazanov

Fri, 16 Feb 2018 14:26:08 +0000

33 lines
New Thread

EM Validation Developer Post

EM Validation Developer Post

Maya Topf

Mon, 12 Feb 2018 08:24:00 +0000

92 lines
New Thread

error while running partile-sort after auto-pick by GUI

Re: error while running partile-sort after auto-pick by GUI

Sjors Scheres

Wed, 28 Feb 2018 14:25:00 +0000

82 lines

Re: error while running partile-sort after auto-pick by GUI

CuiKunlei

Wed, 28 Feb 2018 21:29:36 +0800

76 lines

Re: error while running partile-sort after auto-pick by GUI

Sjors Scheres

Wed, 28 Feb 2018 12:44:14 +0000

48 lines

error while running partile-sort after auto-pick by GUI

CuiKunlei

Wed, 28 Feb 2018 18:20:13 +0800

294 lines
New Thread

Faculty openings at University of Vienna: Professorship and 2 tenure track positions

Faculty openings at University of Vienna: Professorship and 2 tenure track positions

Kristina Djinovic Carugo

Sat, 10 Feb 2018 09:58:54 +0100

4362 lines
New Thread

generate a map directly from a star file of subtomogram data

Re: generate a map directly from a star file of subtomogram data

Sjors Scheres

Tue, 6 Feb 2018 16:08:05 +0000

30 lines

Re: generate a map directly from a star file of subtomogram data

Rui Yan

Tue, 6 Feb 2018 15:59:42 +0000

25 lines

Re: generate a map directly from a star file of subtomogram data

Sjors Scheres

Tue, 6 Feb 2018 10:09:46 +0000

36 lines

Re: generate a map directly from a star file of subtomogram data

Rui Yan

Mon, 5 Feb 2018 17:57:15 +0000

28 lines

Re: generate a map directly from a star file of subtomogram data

Sjors Scheres

Sun, 4 Feb 2018 16:09:47 -0000

92 lines

Re: generate a map directly from a star file of subtomogram data

Rui Yan

Sun, 4 Feb 2018 00:30:26 +0000

22 lines

Re: generate a map directly from a star file of subtomogram data

Qiang Guo

Sat, 3 Feb 2018 22:25:39 +0100

192 lines

generate a map directly from a star file of subtomogram data

Rui Yan

Sat, 3 Feb 2018 10:40:19 +0000

72 lines
New Thread

How to kill a Zombie RELION job

Re: How to kill a Zombie RELION job

Sjors Scheres

Wed, 28 Feb 2018 14:24:11 +0000

118 lines

Re: How to kill a Zombie RELION job

Laurence Pearl

Wed, 28 Feb 2018 14:07:30 +0000

269 lines

Re: How to kill a Zombie RELION job

Sjors Scheres

Wed, 28 Feb 2018 12:46:13 +0000

71 lines

Re: How to kill a Zombie RELION job

Lugmayr, Wolfgang

Tue, 27 Feb 2018 11:35:01 +0100

152 lines

How to kill a Zombie RELION job

Laurence Pearl

Mon, 26 Feb 2018 22:45:01 +0000

91 lines
New Thread

How to re-run a finished job

Re: How to re-run a finished job

CuiKunlei

Sun, 11 Feb 2018 18:29:45 +0800

63 lines

Re: How to re-run a finished job

Guillaume Gaullier

Sun, 11 Feb 2018 00:22:47 -0700

65 lines

How to re-run a finished job

CuiKunlei

Sun, 11 Feb 2018 14:45:11 +0800

33 lines
New Thread

Job Advertisement

Job Advertisement

Michaela James

Mon, 5 Feb 2018 23:07:52 +0000

28684 lines
New Thread

LMB cryoEM course 2017

LMB cryoEM course 2017

Sjors Scheres

Thu, 1 Feb 2018 16:18:55 +0000

40 lines
New Thread

Local ctf estimation 'breaks' after several micrographs

Re: Local ctf estimation 'breaks' after several micrographs

Andrey Malyutin

Tue, 13 Feb 2018 21:18:38 +0000

12 lines

Re: Local ctf estimation 'breaks' after several micrographs

Zack Berndsen

Tue, 13 Feb 2018 18:45:43 +0000

148 lines

Re: Local ctf estimation 'breaks' after several micrographs

Reza Khayat

Tue, 13 Feb 2018 13:37:35 +0000

1876 lines

Re: Local ctf estimation 'breaks' after several micrographs

Oliver Clarke

Tue, 13 Feb 2018 00:59:05 -0500

1802 lines

Local ctf estimation 'breaks' after several micrographs

Andrey Malyutin

Tue, 13 Feb 2018 04:10:53 +0000

26 lines
New Thread

Masked and unmasked FSC has ~1.8A difference at 0.143 cut off

Re: Masked and unmasked FSC has ~1.8A difference at 0.143 cut off

Sandip Basak

Thu, 8 Feb 2018 10:27:09 -0500

51 lines

Re: Masked and unmasked FSC has ~1.8A difference at 0.143 cut off

Sjors Scheres

Thu, 8 Feb 2018 10:45:12 +0000

43 lines

Re: Masked and unmasked FSC has ~1.8A difference at 0.143 cut off

Axel Brilot

Wed, 7 Feb 2018 21:10:41 -0800

80 lines

Masked and unmasked FSC has ~1.8A difference at 0.143 cut off

Sandip Basak

Thu, 8 Feb 2018 03:23:26 +0000

451 lines
New Thread

Motioncor2-1.05 Dark Reference Warning with no Dark file input

Re: Motioncor2-1.05 Dark Reference Warning with no Dark file input

Shawn Zheng

Mon, 26 Feb 2018 15:21:49 +0000

66 lines

Motioncor2-1.05 Dark Reference Warning with no Dark file input

Amer Alam

Mon, 26 Feb 2018 11:16:03 +0000

24 lines
New Thread

MPI Biochemistry - Munich, Germany - cryoEM Facility Manager Position

MPI Biochemistry - Munich, Germany - cryoEM Facility Manager Position

Mike Strauss

Sat, 24 Feb 2018 17:40:09 +0100

34 lines
New Thread

MTF in postprocessing

Re: MTF in postprocessing

Sjors Scheres

Mon, 5 Feb 2018 17:18:19 +0000

125 lines

MTF in postprocessing

Bubeck, Doryen A

Mon, 5 Feb 2018 13:21:00 +0000

68 lines
New Thread

PhD Fellowship in cryo-EM at NNF-CPR, University of Copenhagen

PhD Fellowship in cryo-EM at NNF-CPR, University of Copenhagen

Nicholas Michael I Taylor

Thu, 15 Feb 2018 15:06:07 +0000

205 lines
New Thread

PhD in structural biology

PhD in structural biology

Camilo Perez

Sat, 17 Feb 2018 08:02:36 +0100

46 lines
New Thread

PhD Positions in Integrative Structural Biology in Vienna

PhD Positions in Integrative Structural Biology in Vienna

Kristina Djinovic Carugo

Tue, 13 Feb 2018 11:21:59 +0100

1002 lines
New Thread

PhD studentship

PhD studentship

Zhang, Peijun

Fri, 23 Feb 2018 07:08:22 +0000

203 lines
New Thread

Post-doctoral position - University of Sheffield

Post-doctoral position - University of Sheffield

Julien Bergeron

Tue, 13 Feb 2018 11:39:49 +0000

80 lines
New Thread

Postdoctoral scientist position in cryo-ET of host-virus interaction.

Postdoctoral scientist position in cryo-ET of host-virus interaction.

Amedee des Georges

Sat, 10 Feb 2018 00:12:11 +0000

172 lines
New Thread

relion 3D refine error

Re: relion 3D refine error

Chen Sun

Sat, 10 Feb 2018 19:53:23 +0000

272 lines

Re: relion 3D refine error

Sjors Scheres

Sat, 10 Feb 2018 18:25:10 -0000

97 lines

Re: relion 3D refine error

Chen Sun

Sat, 10 Feb 2018 16:41:07 +0000

208 lines

Re: relion 3D refine error

Joshua Lobo

Fri, 9 Feb 2018 18:11:54 -0600

145 lines

relion 3D refine error

Chen Sun

Fri, 9 Feb 2018 20:20:30 +0000

128 lines
New Thread

relion 3D refinement hits time wall limit

Re: relion 3D refinement hits time wall limit

Sjors Scheres

Thu, 15 Feb 2018 09:38:40 +0000

46 lines

Re: relion 3D refinement hits time wall limit

Bjoern Forsberg

Wed, 14 Feb 2018 17:13:00 +0100

155 lines

relion 3D refinement hits time wall limit

Valerie Biou

Wed, 14 Feb 2018 17:00:42 +0100

35 lines
New Thread

relion autopick outlier_removal_zscore

relion autopick outlier_removal_zscore

Joshua Lobo

Mon, 26 Feb 2018 21:22:14 +0000

25 lines
New Thread

Reminder: CCP-EM Spring Symposium IV: 11-12th April 2018 Keele University

Reminder: CCP-EM Spring Symposium IV: 11-12th April 2018 Keele University

Tom Burnley

Thu, 8 Feb 2018 10:02:22 +0000

174 lines
New Thread

Rescaling method implemented in RELION

Re: Rescaling method implemented in RELION

Ali Khan

Fri, 2 Feb 2018 19:59:15 -0500

133 lines

Re: Rescaling method implemented in RELION

Dari Kimanius

Sat, 3 Feb 2018 01:31:50 +0100

56 lines

Rescaling method implemented in RELION

Ali Khan

Fri, 2 Feb 2018 23:30:39 +0000

20 lines
New Thread

Research Assistant - University of Oxford - Peter McHugh Lab

Research Assistant - University of Oxford - Peter McHugh Lab

Denis Ptchelkine

Thu, 8 Feb 2018 17:28:13 +0000

50 lines
New Thread

Research Problem: Intensity of each frame

Research Problem: Intensity of each frame

Hangyu Xie

Thu, 22 Feb 2018 18:39:37 +0000

25 lines
New Thread

Research Problem: _rlncoordinateX and _rlncoordinateY

Re: Research Problem: _rlncoordinateX and _rlncoordinateY

Joshua Lobo

Fri, 23 Feb 2018 14:59:21 -0600

103 lines

Research Problem: _rlncoordinateX and _rlncoordinateY

Hangyu Xie

Thu, 22 Feb 2018 18:49:02 +0000

37 lines
New Thread

Research Problem:16 frames of example data set "betagal"

Re: Research Problem:16 frames of example data set "betagal"

Yehuda Halfon

Thu, 22 Feb 2018 18:49:54 +0000

66 lines

Research Problem:16 frames of example data set "betagal"

Hangyu Xie

Thu, 22 Feb 2018 18:35:08 +0000

28 lines
New Thread

running relion with GUI on cluster

Re: running relion with GUI on cluster

Abhiram Chintangal

Tue, 20 Feb 2018 14:20:22 -0800

255 lines

Re: running relion with GUI on cluster

Sjors Scheres

Sat, 17 Feb 2018 10:15:27 -0000

94 lines

Re: running relion with GUI on cluster

Abhiram Chintangal

Thu, 15 Feb 2018 12:16:32 -0800

224 lines

Re: running relion with GUI on cluster

Lugmayr, Wolfgang

Thu, 15 Feb 2018 17:18:05 +0100

79 lines

Re: running relion with GUI on cluster

Sjors Scheres

Thu, 15 Feb 2018 15:31:41 +0000

95 lines

running relion with GUI on cluster

Benoist LAURENT

Thu, 15 Feb 2018 16:07:54 +0100

38 lines
New Thread

Simulating images

Re: Simulating images

Dmitry Lyumkis

Mon, 12 Feb 2018 05:18:37 +0000

104 lines

Re: Simulating images

Joshua Lobo

Sun, 11 Feb 2018 22:57:01 -0600

40 lines

Simulating images

Thomas Cleveland

Sun, 11 Feb 2018 22:52:09 -0500

40 lines
New Thread

Software Engineer (Web Development) for ISPyB and SynchWeb at Diamond.

Software Engineer (Web Development) for ISPyB and SynchWeb at Diamond.

Alun Ashton

Mon, 5 Feb 2018 16:29:28 +0000

60 lines
New Thread

space requirement for localrec files

space requirement for localrec files

Dieter Blaas

Thu, 8 Feb 2018 08:06:19 +0100

35 lines
New Thread

standard repeatable benchmark

Re: standard repeatable benchmark

Bjoern Forsberg

Wed, 21 Feb 2018 09:20:33 +0100

57 lines

standard repeatable benchmark

David Hoover

Tue, 20 Feb 2018 11:44:03 -0500

24 lines
New Thread

To use, or not to use? That is my question about 2x Binned Data

Re: To use, or not to use? That is my question about 2x Binned Data

Sjors Scheres

Tue, 13 Feb 2018 09:29:13 +0000

75 lines

Re: To use, or not to use? That is my question about 2x Binned Data

Joshua Lobo

Tue, 13 Feb 2018 00:15:01 -0600

136 lines

To use, or not to use? That is my question about 2x Binned Data

Kako

Mon, 12 Feb 2018 22:51:07 -0500

115 lines
New Thread

unblur from relion

unblur from relion

Leonid Sazanov

Wed, 14 Feb 2018 10:25:51 +0000

20 lines
New Thread

unsubscribe

unsubscribe

Peter Metcalf

Sat, 10 Feb 2018 19:01:55 +0000

36 lines
New Thread

Vacancy for scientific data curator (EMDB/EMPIAR) at EMBL-EBI

Vacancy for scientific data curator (EMDB/EMPIAR) at EMBL-EBI

Ardan Patwardhan

Fri, 16 Feb 2018 13:57:05 +0000

96 lines
New Thread

Weird behaviour of Manual Picking

Re: Weird behaviour of Manual Picking

Laurence Pearl

Fri, 23 Feb 2018 21:07:06 +0000

236 lines

Re: Weird behaviour of Manual Picking

Takanori Nakane

Fri, 23 Feb 2018 19:08:44 +0000

57 lines

Re: Weird behaviour of Manual Picking

Joshua Lobo

Fri, 23 Feb 2018 12:40:41 -0600

210 lines

Weird behaviour of Manual Picking

Laurence Pearl

Fri, 23 Feb 2018 18:02:14 +0000

156 lines
New Thread

wrongs about "Making templates for auto-picking" in the "relion21_tutorial" ,section 3.6

Re: wrongs about "Making templates for auto-picking" in the "relion21_tutorial" ,section 3.6

Joshua Lobo

Wed, 7 Feb 2018 11:17:55 -0600

736 lines

wrongs about "Making templates for auto-picking" in the "relion21_tutorial" ,section 3.6

CuiKunlei

Wed, 7 Feb 2018 23:54:00 +0800

701 lines
New Thread

Young Independent Researcher Groups: a Postdoc-Programme for Innovative, Interdisciplinary Teams

Young Independent Researcher Groups: a Postdoc-Programme for Innovative, Interdisciplinary Teams

Dieter Blaas

Thu, 8 Feb 2018 10:33:04 +0100

45 lines
New Thread

[ccpem] mont corr runn error with tutorial data

Re: Fwd: Re: [ccpem] mont corr runn error with tutorial data

Sjors Scheres

Thu, 22 Feb 2018 13:56:46 +0000

98 lines

Fwd: Re: [ccpem] mont corr runn error with tutorial data

Chitra Rajendran

Thu, 22 Feb 2018 11:41:35 +0100

315 lines

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